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Large Language Models (LLMs) are now widely used for query reformulation and expansion in Information Retrieval, with many studies reporting substantial effectiveness gains. However, these results are typically obtained under heterogeneous…

Information Retrieval · Computer Science 2026-05-01 Amin Bigdeli , Radin Hamidi Rad , Hai Son Le , Mert Incesu , Negar Arabzadeh , Charles L. A. Clarke , Ebrahim Bagheri

Reproducibility remains a central challenge in machine learning (ML), especially in collaborative eScience projects where teams iterate over data, features, and models. Current ML workflows are often dynamic yet fragmented, relying on…

Machine Learning · Computer Science 2025-06-23 Zhiwei Li , Carl Kesselman , Tran Huy Nguyen , Benjamin Yixing Xu , Kyle Bolo , Kimberley Yu

Clusters of genes that have evolved by repeated segmental duplication present difficult challenges throughout genomic analysis, from sequence assembly to functional analysis. Improved understanding of these clusters is of utmost importance,…

Machine Learning · Computer Science 2010-01-25 Tomáš Vinař , Broňa Brejová , Giltae Song , Adam Siepel

Addressing the reproducibility crisis in artificial intelligence through the validation of reported experimental results is a challenging task. It necessitates either the reimplementation of techniques or a meticulous assessment of papers…

Machine Learning · Computer Science 2023-11-14 György Kovács , Attila Fazekas

Many applications in Reinforcement Learning (RL) usually have noise or stochasticity present in the environment. Beyond their impact on learning, these uncertainties lead the exact same policy to perform differently, i.e. yield different…

Machine Learning · Computer Science 2024-01-23 Manon Flageat , Bryan Lim , Antoine Cully

Replicability and reproducibility of experimental results are primary concerns in all the areas of science and IR is not an exception. Besides the problem of moving the field towards more reproducible experimental practices and protocols,…

Information Retrieval · Computer Science 2020-10-27 Timo Breuer , Nicola Ferro , Norbert Fuhr , Maria Maistro , Tetsuya Sakai , Philipp Schaer , Ian Soboroff

Human perceptual studies are the gold standard for the evaluation of many research tasks in machine learning, linguistics, and psychology. However, these studies require significant time and cost to perform. As a result, many researchers…

Human-Computer Interaction · Computer Science 2022-03-10 Max Morrison , Brian Tang , Gefei Tan , Bryan Pardo

Context: Mining software repositories is a popular means to gain insights into a software project's evolution, monitor project health, support decisions and derive best practices. Tools supporting the mining process are commonly applied by…

Software Engineering · Computer Science 2025-11-13 Nicole Hoess , Carlos Paradis , Rick Kazman , Wolfgang Mauerer

While recent research increasingly emphasizes the value of human-LLM collaboration in competitive programming and proposes numerous empirical methods, a comprehensive understanding remains elusive due to the fragmented nature of existing…

Artificial Intelligence · Computer Science 2025-05-23 Xinwei Yang , Zhaofeng Liu , Chen Huang , Jiashuai Zhang , Tong Zhang , Yifan Zhang , Wenqiang Lei

This paper investigates the reproducibility of computational science research and identifies key challenges facing the community today. It is the result of the First Summer School on Experimental Methodology in Computational Science…

Reproducibility is a fundamental requirement for validating scientific claims in computational research. Stochastic computational models are widely used in fields such as systems biology, financial modeling and environmental sciences.…

The literature has witnessed an emerging interest in AI agents for automated assessment of scientific papers. Existing benchmarks focus primarily on the computational aspect of this task, testing agents' ability to reproduce or replicate…

Concerns about reproducibility in artificial intelligence (AI) have emerged, as researchers have reported unsuccessful attempts to directly reproduce published findings in the field. Replicability, the ability to affirm a finding using the…

Computer Vision and Pattern Recognition · Computer Science 2023-04-21 Kehinde Ajayi , Muntabir Hasan Choudhury , Sarah Rajtmajer , Jian Wu

A common claim of evolutionary computation methods is that they can achieve good results without the need for human intervention. However, one criticism of this is that there are still hyperparameters which must be tuned in order to achieve…

Neural and Evolutionary Computing · Computer Science 2021-02-11 Benjamin Patrick Evans , Bing Xue , Mengjie Zhang

Large Language Models (LLMs) are used for Register-Transfer Level (RTL) code generation, but they face two main challenges: functional correctness and Power, Performance, and Area (PPA) optimization. Iterative, feedback-based methods…

Neural and Evolutionary Computing · Computer Science 2025-10-27 Kyungjun Min , Kyumin Cho , Junhwan Jang , Seokhyeong Kang

The vast majority of scientific contributions in the field of computational systems biology are based on mathematical models. These models can be broadly classified as either dynamic (kinetic) models or steady-state (constraint-based)…

Other Quantitative Biology · Quantitative Biology 2025-04-17 Moritz E. Beber

Automated interpretability systems aim to reduce the need for human labor and scale analysis to increasingly large models and diverse tasks. Recent efforts toward this goal leverage large language models (LLMs) at increasing levels of…

Artificial Intelligence · Computer Science 2026-03-23 Tal Haklay , Nikhil Prakash , Sana Pandey , Antonio Torralba , Aaron Mueller , Jacob Andreas , Tamar Rott Shaham , Yonatan Belinkov

Context: Empirical Software Engineering (ESE) faces increasing challenges due to data scale, methodological complexity, and reproducibility concerns. Large Language Models (LLMs) have emerged as promising tools to support empirical…

Software Engineering · Computer Science 2026-04-30 Victoria Gomes , Delaney Selb , Fabio Palomba , Rodrigo Spinola , David Lo

Reproducibility of computational studies is a hallmark of scientific methodology. It enables researchers to build with confidence on the methods and findings of others, reuse and extend computational pipelines, and thereby drive scientific…

As generative AI models such as large language models (LLMs) become more pervasive, ensuring the safety, robustness, and overall trustworthiness of these systems is paramount. However, AI is currently facing a reproducibility crisis driven…

Machine Learning · Computer Science 2026-05-14 Deepak Pandita , Flip Korn , Chris Welty , Christopher M. Homan