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Molecular discovery has brought great benefits to the chemical industry. Various molecule design techniques are developed to identify molecules with desirable properties. Traditional optimization methods, such as genetic algorithms,…

Biomolecules · Quantitative Biology 2025-11-05 Chris Zhuang , Debadyuti Mukherjee , Yingzhou Lu , Tianfan Fu , Ruqi Zhang

Self-supervised objectives have driven major advances in NLP by leveraging large-scale unlabeled data, but such resources are scarce for many of the world's languages. Surprisingly, they have not been explored much for character-level…

Computation and Language · Computer Science 2025-06-06 Adam Wiemerslage , Katharina von der Wense

Goal-oriented de novo molecule design, namely generating molecules with specific property or substructure constraints, is a crucial yet challenging task in drug discovery. Existing methods, such as Bayesian optimization and reinforcement…

Computational Engineering, Finance, and Science · Computer Science 2025-02-28 Chuanliu Fan , Ziqiang Cao , Zicheng Ma , Nan Yu , Yimin Peng , Jun Zhang , Yiqin Gao , Guohong Fu

In real-world drug design, molecule optimization requires selectively improving multiple molecular properties up to pharmaceutically relevant levels, while maintaining others that already meet such criteria. However, existing computational…

Machine Learning · Computer Science 2025-06-02 Vishal Dey , Xiao Hu , Xia Ning

Optimization modeling translates real decision-making problems into mathematical optimization models and solver-executable implementations. Although language models are increasingly used to generate optimization formulations and solver…

Artificial Intelligence · Computer Science 2026-05-13 Zhong Li , Qi Huang , Yuxuan Zhu , Mohammad Mohammadi Amiri , Niki van Stein , Thomas Bäck , Matthijs van Leeuwen , Zaiwen Wen , Lincen Yang

Mathematical reasoning is a fundamental capability for large language models (LLMs), yet achieving high performance in this domain remains a significant challenge. The auto-regressive generation process often makes LLMs susceptible to…

Artificial Intelligence · Computer Science 2024-12-02 Xiaoxuan Lou , Chaojie Wang , Bo An

Modern optimizers like Adam and Muon are central to training large language models, but their reliance on first- and second-order momenta introduces significant memory overhead, which constrains scalability and computational efficiency. In…

Machine Learning · Computer Science 2026-03-02 Zhengbo Wang , Jian Liang , Ran He , Zilei Wang , Tieniu Tan

We consider the task of generating functionally correct code using large language models (LLMs). The correctness of generated code is influenced by the prompt used to query the given base LLM. We formulate the problem of finding the…

Software Engineering · Computer Science 2025-12-18 Shlok Tomar , Aryan Deshwal , Ethan Villalovoz , Mattia Fazzini , Haipeng Cai , Janardhan Rao Doppa

Molecular-orbital-based machine learning (MOB-ML) enables the prediction of accurate correlation energies at the cost of obtaining molecular orbitals. Here, we present the derivation, implementation, and numerical demonstration of MOB-ML…

Chemical Physics · Physics 2021-04-07 Sebastian J. R. Lee , Tamara Husch , Feizhi Ding , Thomas F. Miller

Accurate prediction of mRNA secondary structure is critical for understanding gene expression, translation efficiency, and advancing mRNA-based therapeutics. However, the combinatorial complexity of possible foldings, especially in long…

Learning general representations of text is a fundamental problem for many natural language understanding (NLU) tasks. Previously, researchers have proposed to use language model pre-training and multi-task learning to learn robust…

Computation and Language · Computer Science 2019-08-29 Zi-Yi Dou , Keyi Yu , Antonios Anastasopoulos

Addressing the paramount need for precise calibration in superconducting quantum qubits, especially in frequency control, this study introduces a novel calibration scheme harnessing the principles of Many-Body Localization (MBL). While…

Quantum Physics · Physics 2023-10-17 Peng Qian , Hong-Ze Xu , Peng Zhao , Xiao Li , Dong E. Liu

Automatic prompt optimization is an important approach to improving the performance of large language models (LLMs). Recent research demonstrates the potential of using LLMs as prompt optimizers, which can generate improved task prompts via…

Computation and Language · Computer Science 2025-01-28 Xinyu Tang , Xiaolei Wang , Wayne Xin Zhao , Siyuan Lu , Yaliang Li , Ji-Rong Wen

Mathematical word problem-solving has long been recognized as a complex task for small language models (SLMs). A recent study hypothesized that the smallest model size, needed to achieve over 80% accuracy on the GSM8K benchmark, is 34…

Computation and Language · Computer Science 2024-02-26 Arindam Mitra , Hamed Khanpour , Corby Rosset , Ahmed Awadallah

Robots are increasingly becoming part of our daily lives, interacting with both the environment and humans to perform their tasks. The software of such robots often undergoes upgrades, for example, to add new functionalities, fix bugs, or…

Software Engineering · Computer Science 2025-08-05 Xinyi Wang , Qinghua Xu , Paolo Arcaini , Shaukat Ali , Thomas Peyrucain

OpenACC lowers the barrier to GPU offloading, but writing high-performing pragma remains complex, requiring deep domain expertise in memory hierarchies, data movement, and parallelization strategies. Large Language Models (LLMs) present a…

Software Engineering · Computer Science 2026-01-15 Samyak Jhaveri , Cristina V. Lopes

Large Language Models (LLMs) have shown remarkable success, and their multimodal expansions (MLLMs) further unlock capabilities spanning images, videos, and other modalities beyond text. However, despite this shift, prompt optimization…

Machine Learning · Computer Science 2026-02-20 Yumin Choi , Dongki Kim , Jinheon Baek , Sung Ju Hwang

Current molecular understanding approaches predominantly focus on the descriptive aspect of human perception, providing broad, topic-level insights. However, the referential aspect -- linking molecular concepts to specific structural…

Artificial Intelligence · Computer Science 2025-05-02 Jiaxin Wu , Ting Zhang , Rubing Chen , Wengyu Zhang , Chen Jason Zhang , Xiao-Yong Wei , Li Qing

Multicalibration [HJKRR18] is an algorithmic fairness perspective that demands that the predictions of a predictor are correct conditional on themselves and membership in a collection of potentially overlapping subgroups of a population.…

Machine Learning · Computer Science 2025-11-10 Lunjia Hu , Haipeng Luo , Spandan Senapati , Vatsal Sharan

Prompt learning has become a dominant paradigm for adapting vision-language models (VLMs) such as CLIP to downstream tasks without modifying pretrained weights. While extending prompts to both vision and text encoders across multiple…

Computer Vision and Pattern Recognition · Computer Science 2026-02-26 Sajjad Ghiasvand , Haniyeh Ehsani Oskouie , Mahnoosh Alizadeh , Ramtin Pedarsani
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