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Large-scale simulations of plasmas are essential for advancing our understanding of fusion devices, space, and astrophysical systems. Particle-in-Cell (PIC) codes have demonstrated their success in simulating numerous plasma phenomena on…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-07-05 Steven W. D. Chien , Jonas Nylund , Gabriel Bengtsson , Ivy B. Peng , Artur Podobas , Stefano Markidis

We develop new numerical schemes for Vlasov--Poisson equations with high-order accuracy. Our methods are based on a spatially monotonicity-preserving (MP) scheme and are modified suitably so that positivity of the distribution function is…

Computational Physics · Physics 2017-11-08 Satoshi Tanaka , Kohji Yoshikawa , Takashi Minoshima , Naoki Yoshida

Scalable and efficient numerical simulations continue to gain importance, as computation is firmly established as the third pillar of discovery, alongside theory and experiment. Meanwhile, the performance of computing hardware grows through…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-26 Pietro Incardona , Antonio Leo , Yaroslav Zaluzhnyi , Rajesh Ramaswamy , Ivo F. Sbalzarini

Transistor-level simulation plays a vital role in validating the physical correctness of integrated circuits. However, such simulations are computationally expensive. This paper proposes three novel reduction methods specifically tailored…

Hardware Architecture · Computer Science 2025-08-20 Ruibai Tang , Wenlai Zhao

We present a computational method for extreme-scale simulations of incompressible turbulent wall flows at high Reynolds numbers. The numerical algorithm extends a popular method for solving second-order finite differences Poisson/Helmholtz…

Fluid Dynamics · Physics 2025-08-07 Rafael Diez Sanhueza , Jurriaan Peeters , Pedro Costa

A novel parallel efficiency analysis on a framework for simulating the growth of Malignant Pleural Mesothelioma (MPM) tumours is presented. Proliferation of MPM tumours in the pleural space is simulated using a Cellular Potts Model (CPM)…

Computational Engineering, Finance, and Science · Computer Science 2025-05-07 Anton Dolganov , Valeria Krzhizhanovskaya , Stefano Trebeschi , Vivek M. Sheraton

Purpose: We present SCAMPI (Sparsity Constrained Application of deep Magnetic resonance Priors for Image reconstruction), an untrained deep Neural Network for MRI reconstruction without previous training on datasets. It expands the Deep…

Medical Physics · Physics 2024-05-21 Thomas M. Siedler , Peter M. Jakob , Volker Herold

We investigate the parallel performance of Parallel Spectral Deferred corrections, a numerical approach that provides small-scale parallelism for the numerical solution of initial value problems. The scheme is applied to the shallow-water…

Computational Engineering, Finance, and Science · Computer Science 2026-03-04 Philip Freese , Sebastian Götschel , Thibaut Lunet , Daniel Ruprecht , Martin Schreiber

Energy systems planning models identify least-cost strategies for expansion and operation of energy systems and provide decision support for investment, planning, regulation, and policy. Most are formulated as linear programming (LP) or…

Optimization and Control · Mathematics 2025-01-08 Anna Jacobson , Filippo Pecci , Nestor Sepulveda , Qingyu Xu , Jesse Jenkins

Human beings construct perception of space by integrating sparse observations into massively interconnected synapses and neurons, offering a superior parallelism and efficiency. Replicating this capability in AI finds wide applications in…

Cognitive simulation (CogSim) is an important and emerging workflow for HPC scientific exploration and scientific machine learning (SciML). One challenging workload for CogSim is the replacement of one component in a complex physical…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-13 Michael R Wyatt , Valen Yamamoto , Zoe Tosi , Ian Karlin , Brian Van Essen

Recent results on supercomputers show that beyond 65K cores, the efficiency of molecular dynamics simulations of interfacial systems decreases significantly. In this paper, we introduce a dynamic cutoff method (DCM) for interfacial systems…

Computational Physics · Physics 2017-01-23 Paul Springer , Ahmed E. Ismail , Paolo Bientinesi

We propose a framework for training neural networks that are coupled with partial differential equations (PDEs) in a parallel computing environment. Unlike most distributed computing frameworks for deep neural networks, our focus is to…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-25 Kailai Xu , Weiqiang Zhu , Eric Darve

Super-Droplet Method (SDM) is a probabilistic Monte-Carlo-type model of particle coagulation process, an alternative to the mean-field formulation of Smoluchowski. SDM as an algorithm has linear computational complexity with respect to the…

Computational Physics · Physics 2021-07-27 Piotr Bartman , Sylwester Arabas

We present FlowPM, a Particle-Mesh (PM) cosmological N-body code implemented in Mesh-TensorFlow for GPU-accelerated, distributed, and differentiable simulations. We implement and validate the accuracy of a novel multi-grid scheme based on…

Cosmology and Nongalactic Astrophysics · Physics 2020-10-23 Chirag Modi , Francois Lanusse , Uros Seljak

We present an iterative method to reconstruct the linear-theory initial conditions from the late-time cosmological matter density field, with the intent of improving the recovery of the cosmic distance scale from the baryon acoustic…

Cosmology and Nongalactic Astrophysics · Physics 2018-11-05 Ryuichiro Hada , Daniel J. Eisenstein

Compactly expressing large-scale datasets through Multivariate Functional Approximations (MFA) can be critically important for analysis and visualization to drive scientific discovery. Tackling such problems requires scalable data…

Numerical Analysis · Mathematics 2022-10-14 Vijay S. Mahadevan , David Lenz , Iulian Grindeanu , Thomas Peterka

We present an algorithm for cluster dynamics to efficiently simulate large systems on MIMD parallel computers with large numbers of processors. The method divides physical space into rectangular cells which are assigned to processors and…

High Energy Physics - Lattice · Physics 2009-10-22 Mike Flanigan , Pablo Tamayo

Bayesian posterior inference of modern multi-probe cosmological analyses incurs massive computational costs. For instance, depending on the combinations of probes, a single posterior inference for the Dark Energy Survey (DES) data had a…

Cosmology and Nongalactic Astrophysics · Physics 2023-01-25 Chun-Hao To , Eduardo Rozo , Elisabeth Krause , Hao-Yi Wu , Risa H. Wechsler , Andrés N. Salcedo

Direct numerical simulation (DNS) for gas-solid flow is implemented on a multi-scale supercomputing system, Mole-8.5, featuring massive parallel GPU-CPU hybrid computing, for which the lattice Boltzmann method (LBM) is deployed together…