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This paper develops an R package rMultiNet to analyze multilayer network data. We provide two general frameworks from recent literature, e.g. mixture multilayer stochastic block model(MMSBM) and mixture multilayer latent space model(MMLSM)…

Machine Learning · Statistics 2023-02-10 Ting Li , Zhongyuan Lyu , Chenyu Ren , Dong Xia

RSNet is an open-source R package that provides a resampling-based framework for robust and interpretable network inference, designed to address the limited-sample-size challenges common in high-dimensional data. It supports both the…

Machine Learning · Computer Science 2026-05-14 Ziwei Huang , Zeyuan Song , Paola Sebastiani , Stefano Monti

Multilayer networks are a useful way to capture and model multiple, binary or weighted relationships among a fixed group of objects. While community detection has proven to be a useful exploratory technique for the analysis of single-layer…

Social and Information Networks · Computer Science 2017-11-09 James D. Wilson , John Palowitch , Shankar Bhamidi , Andrew B. Nobel

We introduce CCMnet, an R package designed to generate network ensembles that accurately reflect the uncertainty inherent in empirical data. While traditional network modeling often results in ensembles with fixed property values or…

Computation · Statistics 2026-03-04 Ravi Goyal , Victor De Gruttola , Natasha K. Martin , Lior Rennert , Jukka-Pekka Onnela

Understanding complex interactions within microbiomes is essential for exploring their roles in health and disease. However, constructing reliable microbiome networks often poses a challenge due to variations in the output of different…

Applications · Statistics 2024-11-14 Rosa Aghdam , Claudia Solis-Lemus

A wide range of complex systems can be modeled as networks with corresponding constraints on the edges and nodes, which have been extensively studied in recent years. Nowadays, with the progress of information technology, systems that…

Physics and Society · Physics 2016-05-24 Han Zhang , Chang-Dong Wang , Jian-Huang Lai , Philip S. Yu

Multiplex networks are collections of networks with identical nodes but distinct layers of edges. They are genuine representations for a large variety of real systems whose elements interact in multiple fashions or flavors. However,…

Physics and Society · Physics 2024-02-27 Daniel Kaiser , Siddharth Patwardhan , Minsuk Kim , Filippo Radicchi

Representing various networked data as multiplex networks, networks of networks and other multilayer networks can reveal completely new types of structures in these system. We introduce a general and principled graphlet framework for…

Physics and Society · Physics 2022-04-22 Sallamari Sallmen , Tarmo Nurmi , Mikko Kivelä

Recent strategies achieved ensembling "for free" by fitting concurrently diverse subnetworks inside a single base network. The main idea during training is that each subnetwork learns to classify only one of the multiple inputs…

Machine Learning · Computer Science 2021-08-25 Alexandre Rame , Remy Sun , Matthieu Cord

The statistical analysis of structured spatial point process data where the event locations are determined by an underlying spatially embedded relational system has become a vivid field of research. Despite a growing literature on different…

Methodology · Statistics 2022-12-13 Pol Llagostera , Carles Comas , Matthias Eckardt

Representation learning of networks has witnessed significant progress in recent times. Such representations have been effectively used for classic network-based machine learning tasks like node classification, link prediction, and network…

Social and Information Networks · Computer Science 2018-12-07 Arunkumar Bagavathi , Siddharth Krishnan

Multilayer network analysis has become a vital tool for understanding different relationships and their interactions in a complex system, where each layer in a multilayer network depicts the topological structure of a group of nodes…

Social and Information Networks · Computer Science 2017-09-18 Weiyi Liu , Pin-Yu Chen , Sailung Yeung , Toyotaro Suzumura , Lingli Chen

Multiplex network embedding is an effective technique to jointly learn the low-dimensional representations of nodes across network layers. However, the number of edges among layers may vary significantly. This data imbalance will lead to…

Social and Information Networks · Computer Science 2023-01-02 Kejia Chen , Yinchu Qiu , Zheng Liu

iGraphMatch is an R package for finding corresponding vertices between two graphs, also known as graph matching. The package implements three categories of prevalent graph matching algorithms including relaxation-based, percolation-based,…

Computation · Statistics 2021-12-20 Zihuan Qiao , Daniel Sussman

Mixed data arise when observations are described by a mixture of numerical and categorical variables. The R package PCAmixdata extends to this type of data standard multivariate analysis methods which allow description, exploration and…

Computation · Statistics 2022-10-25 Marie Chavent , Vanessa Kuentz-Simonet , Amaury Labenne , Jérôme Saracco

We introduce the R package ContaminatedMixt, conceived to disseminate the use of mixtures of multivariate contaminated normal distributions as a tool for robust clustering and classification under the common assumption of elliptically…

Computation · Statistics 2016-06-14 Antonio Punzo , Angelo Mazza , Paul D. McNicholas

We present the R-package mgm for the estimation of k-order Mixed Graphical Models (MGMs) and mixed Vector Autoregressive (mVAR) models in high-dimensional data. These are a useful extensions of graphical models for only one variable type,…

Applications · Statistics 2020-02-13 Jonas M. B. Haslbeck , Lourens J. Waldorp

In this paper, we propose MGNet, a simple and effective multiplex graph convolutional network (GCN) model for multimodal brain network analysis. The proposed method integrates tensor representation into the multiplex GCN model to extract…

Computer Vision and Pattern Recognition · Computer Science 2021-08-03 Zhaoming Kong , Lichao Sun , Hao Peng , Liang Zhan , Yong Chen , Lifang He

The rebmix package provides R functions for random univariate and multivariate finite mixture model generation, estimation, clustering and classification. The paper is focused on multivariate normal mixture models with unrestricted…

Machine Learning · Statistics 2018-01-29 Marko Nagode

\pkg{multiplex} is a computer program that provides algebraic tools for the analysis of multiple network structures within the \proglang{R} environment. Apart from the possibility to create and manipulate multivariate data representing…

Social and Information Networks · Computer Science 2022-01-31 J Antonio Rivero Ostoic
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