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The simulation of the physical movement of multi-body systems at an atomistic level, with forces calculated from a quantum mechanical description of the electrons, motivates a graph partitioning problem studied in this article. Several…

A balanced partition is a clustering of a graph into a given number of equal-sized parts. For instance, the Bisection problem asks to remove at most k edges in order to partition the vertices into two equal-sized parts. We prove that…

Discrete Mathematics · Computer Science 2016-01-12 René van Bevern , Andreas Emil Feldmann , Manuel Sorge , Ondřej Suchý

For a fixed property (graph class) ${\Pi}$, given a graph G and an integer k, the ${\Pi}$-deletion problem consists in deciding if we can turn $G$ into a graph with the property ${\Pi}$ by deleting at most $k$ edges. The ${\Pi}$-deletion…

Discrete Mathematics · Computer Science 2023-07-14 Ivo Koch , Nina Pardal , Vinicius Fernandes dos Santos

We consider edge modification problems towards block and strictly chordal graphs, where one is given an undirected graph $G = (V,E)$ and an integer $k \in \mathbb{N}$ and seeks to edit (add or delete) at most $k$ edges from $G$ to obtain a…

Data Structures and Algorithms · Computer Science 2025-05-07 Maël Dumas , Anthony Perez , Mathis Rocton , Ioan Todinca

We explore the concept of separating systems of vertex sets of graphs. A separating system of a set $X$ is a collection of subsets of $X$ such that for any pair of distinct elements in $X$, there exists a set in the separating system that…

The neighborhood polynomial of graph $G$ is the generating function for the number of vertex subsets of $G$ of which the vertices have a common neighbor in $G$. In this paper, we investigate the behavior of this polynomial under several…

Combinatorics · Mathematics 2018-07-12 Maryam Alipour , Peter Tittmann

In many real world networks, there already exists a (not necessarily optimal) $k$-partitioning of the network. Oftentimes, one aims to find a $k$-partitioning with a smaller cut value for such networks by moving only a few nodes across…

Data Structures and Algorithms · Computer Science 2024-02-26 Majid Behbahani , Mina Dalirrooyfard , Elaheh Fata , Yuriy Nevmyvaka

Simplifying graphs is a very applicable problem in numerous domains, especially in computational geometry. Given a geometric graph and a threshold, the minimum-complexity graph simplification asks for computing an alternative graph of…

Computational Geometry · Computer Science 2021-11-05 Omrit Filtser , Majid Mirzanezhad , Carola Wenk

We study a graph partitioning problem motivated by the simulation of the physical movement of multi-body systems on an atomistic level, where the forces are calculated from a quantum mechanical description of the electrons. Several advanced…

A graph separator is a subset of vertices of a graph whose removal divides the graph into small components. Computing small graph separators for various classes of graphs is an important computational task. In this paper, we present a…

Computational Complexity · Computer Science 2020-05-14 Chetan Gupta , Rahul Jain , Raghunath Tewari

We consider (closed neighbourhood) packings and their generalization in graphs called limited packings. A vertex set X in a graph G is a k-limited packing if for any vertex $v\in V(G)$, $\left|N[v] \cap X\right| \le k$, where $N[v]$ is the…

Discrete Mathematics · Computer Science 2014-07-08 Andrei Gagarin , Vadim Zverovich

The BiCluster Editing problem aims at editing a given bipartite graph into a disjoint union of bicliques via a minimum number of edge deletion or addition operations. As a graph-based model for data clustering, the problem aims at a…

Data Structures and Algorithms · Computer Science 2025-11-18 Faisal N. Abu-Khzam , Lucas Isenmann , Zeina Merchad

Graph embedding is a popular algorithmic approach for creating vector representations for individual vertices in networks. Training these algorithms at scale is important for creating embeddings that can be used for classification, ranking,…

Machine Learning · Computer Science 2019-07-04 C. Bayan Bruss , Anish Khazane , Jonathan Rider , Richard Serpe , Saurabh Nagrecha , Keegan E. Hines

The unit interval vertex deletion problem asks for a set of at most $k$ vertices whose deletion from an $n$-vertex graph makes it a unit interval graph. We develop an $O(k^4)$-vertex kernel for the problem, significantly improving the…

Data Structures and Algorithms · Computer Science 2016-07-06 Yuping Ke , Yixin Cao , Xiating Ouyang , Jianxin Wang

We study the computational complexity of the graph modification problems Threshold Editing and Chain Editing, adding and deleting as few edges as possible to transform the input into a threshold (or chain) graph. In this article, we show…

Data Structures and Algorithms · Computer Science 2015-05-05 Pål Grønås Drange , Markus Sortland Dregi , Daniel Lokshtanov , Blair D. Sullivan

Suppose a finite, unweighted, combinatorial graph $G = (V,E)$ is the union of several (degree-)regular graphs which are then additionally connected with a few additional edges. $G$ will then have only a small number of vertices $v \in V$…

Combinatorics · Mathematics 2023-10-25 Tony Zeng

In this paper, we provide an algorithm for traversing geometric graphs which visits all vertices, and reports every vertex and edge exactly once. To achieve this, we combine a given geometric graph $G$ with the integer lattice, seen as a…

Combinatorics · Mathematics 2020-07-14 Sahand Khakabimamaghani , Masood Masjoody , Ladislav Stacho

Graph filtering is the cornerstone operation in graph signal processing (GSP). Thus, understanding it is key in developing potent GSP methods. Graph filters are local and distributed linear operations, whose output depends only on the local…

Signal Processing · Electrical Eng. & Systems 2022-12-21 T. Mitchell Roddenberry , Fernando Gama , Richard G. Baraniuk , Santiago Segarra

We continue research into a well-studied family of problems that ask whether the vertices of a graph can be partitioned into sets $A$ and~$B$, where $A$ is an independent set and $B$ induces a graph from some specified graph class ${\cal…

Data Structures and Algorithms · Computer Science 2017-08-01 Marthe Bonamy , Konrad K. Dabrowski , Carl Feghali , Matthew Johnson , Daniel Paulusma

A graph $G$ is called a \emph{block graph} if each maximal $2$-connected component of $G$ is a clique. In this paper we study the Block Graph Vertex Deletion from the perspective of fixed parameter tractable (FPT) and kernelization…

Data Structures and Algorithms · Computer Science 2015-10-29 Akanksha Agrawal , Sudeshna Kolay , Daniel Lokshtanov , Saket Saurabh