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The well-known dictionary-based algorithms of the Lempel-Ziv (LZ) 77 family are the basis of several universal lossless compression techniques. These algorithms are asymmetric regarding encoding/decoding time and memory requirements, with…

Data Structures and Algorithms · Computer Science 2009-12-31 Artur Ferreira , Arlindo Oliveira , Mario Figueiredo

To extend the context length of Transformer-based large language models (LLMs) and improve comprehension capabilities, we often face limitations due to computational resources and bounded memory storage capacity. This work introduces a…

Computation and Language · Computer Science 2024-06-11 Chensen Huang , Guibo Zhu , Xuepeng Wang , Yifei Luo , Guojing Ge , Haoran Chen , Dong Yi , Jinqiao Wang

We solve the problems of detecting and counting various forms of regularities in a string represented as a Straight Line Program (SLP). Given an SLP of size $n$ that represents a string $s$ of length $N$, our algorithm compute all runs and…

Data Structures and Algorithms · Computer Science 2013-04-29 Tomohiro I , Wataru Matsubara , Kouji Shimohira , Shunsuke Inenaga , Hideo Bannai , Masayuki Takeda , Kazuyuki Narisawa , Ayumi Shinohara

Finding the common subsequences of $L$ multiple strings has many applications in the area of bioinformatics, computational linguistics, and information retrieval. A well-known result states that finding a Longest Common Subsequence (LCS)…

Data Structures and Algorithms · Computer Science 2020-09-09 Jin Cao , Dewei Zhong

Long Context Language Models (LCLMs) have emerged as a new paradigm to perform Information Retrieval (IR), which enables the direct ingestion and retrieval of information by processing an entire corpus in their single context, showcasing…

Information Retrieval · Computer Science 2025-05-29 Minju Seo , Jinheon Baek , Seongyun Lee , Sung Ju Hwang

Suffix trees are an important data structure at the core of optimal solutions to many fundamental string problems, such as exact pattern matching, longest common substring, matching statistics, and longest repeated substring. Recent lines…

Data Structures and Algorithms · Computer Science 2022-08-31 Nicola Rizzo , Alexandru I. Tomescu , Alberto Policriti

In many applications, it is necessary to determine the string similarity. Edit distance[WF74] approach is a classic method to determine Field Similarity. A well known dynamic programming algorithm [GUS97] is used to calculate edit distance…

Data Structures and Algorithms · Computer Science 2007-05-23 Qi Xiao Yang , Sung Sam Yuan , Lu Chun , Li Zhao , Sun Peng

We study how much a linear program (LP) can be compressed when solved repeatedly, given prior knowledge about its objective function. Existing data-driven projection methods learn low-dimensional surrogate LPs with approximate…

Optimization and Control · Mathematics 2026-05-26 Yuhan Ye , Omar Bennouna

We present a compressed representation of tries based on top tree compression [ICALP 2013] that works on a standard, comparison-based, pointer machine model of computation and supports efficient prefix search queries. Namely, we show how to…

Data Structures and Algorithms · Computer Science 2019-09-23 Philip Bille , Inge Li Gørtz , Paweł Gawrychowski , Gad M. Landau , Oren Weimann

One of the most famous and investigated lossless data-compression scheme is the one introduced by Lempel and Ziv about 40 years ago. This compression scheme is known as "dictionary-based compression" and consists of squeezing an input…

Data Structures and Algorithms · Computer Science 2008-02-07 Paolo Ferragina , Igor Nitto , Rossano Venturini

Suppose an oracle knows a string $S$ that is unknown to us and that we want to determine. The oracle can answer queries of the form "Is $s$ a substring of $S$?". In 1995, Skiena and Sundaram showed that, in the worst case, any algorithm…

Data Structures and Algorithms · Computer Science 2021-10-20 Gabriele Fici , Nicola Prezza , Rossano Venturini

Finding an Approximate Longest Common Substring (ALCS) within a given set $S=\{s_1,s_2,\ldots,s_m\}$ of $m \ge 2$ strings is a key problem in computational biology, such as identifying related mutations across multiple genetic sequences. We…

Data Structures and Algorithms · Computer Science 2025-09-22 Hamed Hasibi , Neerja Mhaskar , W. F. Smyth

Linear constraints are the linear counterpart of Haskell's class constraints. Linearly typed parameters allow the programmer to control resources such as file handles and manually managed memory as linear arguments. Indeed, a linear type…

Programming Languages · Computer Science 2026-04-24 Arnaud Spiwack , Csongor Kiss , Jean-Philippe Bernardy , Nicolas Wu , Richard A. Eisenberg

Given a string $S$ of $n$ integers in $[0,\sigma)$, a range minimum query RMQ$(i, j)$ asks for the index of the smallest integer in $S[i \dots j]$. It is well known that the problem can be solved with a succinct data structure of size $2n +…

Data Structures and Algorithms · Computer Science 2019-05-30 Paweł Gawrychowski , Seungbum Jo , Shay Mozes , Oren Weimann

Large language models (LLMs) often struggle to accurately read and comprehend extremely long texts. Current methods for improvement typically rely on splitting long contexts into fixed-length chunks. However, fixed truncation risks…

Computation and Language · Computer Science 2025-06-04 Boheng Sheng , Jiacheng Yao , Meicong Zhang , Guoxiu He

As large language models (LLMs) continue to be deployed and utilized across domains, the volume of LLM-generated data is growing rapidly. This trend highlights the increasing importance of effective and lossless compression for such data in…

Machine Learning · Computer Science 2025-05-13 Yu Mao , Holger Pirk , Chun Jason Xue

Long-context modeling presents a significant challenge for transformer-based large language models (LLMs) due to the quadratic complexity of the self-attention mechanism and issues with length extrapolation caused by pretraining exclusively…

Computation and Language · Computer Science 2024-05-24 Chenghao Yang , Zi Yang , Nan Hua

In-context learning has established itself as an important learning paradigm for Large Language Models (LLMs). In this paper, we demonstrate that LLMs can learn encoding keys in-context and perform analysis directly on encoded…

Computation and Language · Computer Science 2026-04-16 Andresa Rodrigues de Campos , David Lee , Imry Kissos , Piyush Paritosh

An LZ-like factorization of a string divides it into factors, each being either a single character or a copy of a preceding substring. While grammar-based compression schemes support efficient random access with space linear in the…

Data Structures and Algorithms · Computer Science 2026-01-22 Hiroki Shibata , Yuto Nakashima , Yutaro Yamaguchi , Shunsuke Inenaga

Traditionally, data compression deals with the problem of concisely representing a data source, e.g. a sequence of letters, for the purpose of eventual reproduction (either exact or approximate). In this work we are interested in the case…

Information Theory · Computer Science 2013-12-10 Amir Ingber , Tsachy Weissman
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