Related papers: A Domain-Specific Curated Benchmark for Entity and…
Automatically extracting organization names from the affiliation sentences of articles related to biomedicine is of great interest to the pharmaceutical marketing industry, health care funding agencies and public health officials. It will…
Biomedical Event Extraction (BEE) is a challenging task that involves modeling complex relationships between fine-grained entities in biomedical text. BEE has traditionally been formulated as a classification problem. With recent…
Clinical trials predicate subject eligibility on a diversity of criteria ranging from patient demographics to food allergies. Trials post their requirements as semantically complex, unstructured free-text. Formalizing trial criteria to a…
Document-level relation extraction is a challenging task which requires reasoning over multiple sentences in order to predict relations in a document. In this paper, we pro-pose a joint training frameworkE2GRE(Entity and Evidence Guided…
Event Extraction (EE) is one of the fundamental tasks in Information Extraction (IE) that aims to recognize event mentions and their arguments (i.e., participants) from text. Due to its importance, extensive methods and resources have been…
Named entity recognition (NER) and relation extraction (RE) are two important tasks in information extraction and retrieval (IE \& IR). Recent work has demonstrated that it is beneficial to learn these tasks jointly, which avoids the…
Information Extraction (IE) from the tables present in scientific articles is challenging due to complicated tabular representations and complex embedded text. This paper presents TabLeX, a large-scale benchmark dataset comprising table…
Document-level relation extraction (RE) aims to identify the relations between entities throughout an entire document. It needs complex reasoning skills to synthesize various knowledge such as coreferences and commonsense. Large-scale…
Entity and Relation Extraction (ERE) is an important task in information extraction. Recent marker-based pipeline models achieve state-of-the-art performance, but still suffer from the error propagation issue. Also, most of current ERE…
Document-level relation extraction (DocRE) aims to extract semantic relations among entity pairs in a document. Typical DocRE methods blindly take the full document as input, while a subset of the sentences in the document, noted as the…
Named entity disambiguation (NED), which involves mapping textual mentions to structured entities, is particularly challenging in the medical domain due to the presence of rare entities. Existing approaches are limited by the presence of…
Relevant information in documents is often summarized in tables, helping the reader to identify useful facts. Most benchmark datasets support either document layout analysis or table understanding, but lack in providing data to apply both…
Extracting biographical information from online documents is a popular research topic among the information extraction (IE) community. Various natural language processing (NLP) techniques such as text classification, text summarisation and…
Open Information Extraction (OpenIE) aims to extract structured relational tuples (subject, relation, object) from sentences and plays critical roles for many downstream NLP applications. Existing solutions perform extraction at sentence…
With the advent of artificial intelligence (AI), many researchers are attempting to extract structured information from document-level biomedical literature by fine-tuning large language models (LLMs). However, they face significant…
Event extraction (EE) is a critical direction in the field of information extraction, laying an important foundation for the construction of structured knowledge bases. EE from text has received ample research and attention for years, yet…
The advancement of biomedical named entity recognition (BNER) and biomedical relation extraction (BRE) researches promotes the development of text mining in biological domains. As a cornerstone of BRE, robust BNER system is required to…
Information Extraction is a well-researched area of Natural Language Processing with applications in web search and question answering concerned with identifying entities and relationships between them as expressed in a given context,…
Biomedical information extraction (BioIE) is important to many applications, including clinical decision support, integrative biology, and pharmacovigilance, and therefore it has been an active research. Unlike existing reviews covering a…
Physicians provide expert opinion to legal courts on the medical state of patients, including determining if a patient is likely to have permanent or non-permanent injuries or ailments. An independent medical examination (IME) report…