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Knowledge editing aims to update the embedded knowledge within Large Language Models (LLMs). However, existing approaches, whether through parameter modification or external memory integration, often suffer from inconsistent evaluation…

Computation and Language · Computer Science 2025-05-27 Guoxiu He , Xin Song , Futing Wang , Aixin Sun

Health, Safety, and Environment (HSE) compliance assessment demands dynamic real-time decision-making under complicated regulations and complex human-machine-environment interactions. While large language models (LLMs) hold significant…

Computation and Language · Computer Science 2025-05-30 Jianwei Wang , Mengqi Wang , Yinsi Zhou , Zhenchang Xing , Qing Liu , Xiwei Xu , Wenjie Zhang , Liming Zhu

An emerging application of Raman spectroscopy is monitoring the state of chemical reactors during biologic drug production. Raman shift intensities scale linearly with the concentrations of chemical species and thus can be used to…

Signal Processing · Electrical Eng. & Systems 2023-06-30 Dexter Antonio , Hannah O'Toole , Randy Carney , Ambarish Kulkarni , Ahmet Palazoglu

Recent advances in Chain-of-Thought (CoT) prompting have substantially improved the reasoning capabilities of Large Language Models (LLMs). However, these methods often suffer from overthinking, leading to unnecessarily lengthy or redundant…

Computation and Language · Computer Science 2025-06-13 Zhensheng Jin , Xinze Li , Yifan Ji , Chunyi Peng , Zhenghao Liu , Qi Shi , Yukun Yan , Shuo Wang , Furong Peng , Ge Yu

Language models are now capable of solving tasks that require dealing with long sequences consisting of hundreds of thousands of tokens. However, they often fail on tasks that require repetitive use of simple rules, even on sequences that…

Computation and Language · Computer Science 2024-02-21 Mirelle Bueno , Roberto Lotufo , Rodrigo Nogueira

Systematic reviews require the use of rigorously designed search strategies to ensure both comprehensive retrieval and minimization of bias. Conventional manual approaches, although methodologically systematic, are resource-intensive and…

Information Retrieval · Computer Science 2026-02-03 Fatima Nasser , Fouad Trad , Ammar Mohanna , Ghada El-Hajj Fuleihan , Ali Chehab

Large language models (LLMs) are increasingly deployed in settings where reasoning, such as multi-step problem solving and chain-of-thought, is essential. Yet, current evaluation practices overwhelmingly report single-run accuracy while…

Artificial Intelligence · Computer Science 2025-12-09 Nearchos Potamitis , Lars Klein , Akhil Arora

While large language models (LLMs) with Chain-of-Thought (CoT) reasoning excel in mathematics and coding, their potential for systematic reasoning in chemistry, a domain demanding rigorous structural analysis for real-world tasks like drug…

Artificial Intelligence · Computer Science 2026-01-08 Hao Li , He Cao , Bin Feng , Yanjun Shao , Xiangru Tang , Zhiyuan Yan , Li Yuan , Yonghong Tian , Yu Li

Recent frontier-level LLMs have saturated many previously difficult benchmarks, leaving little room for further differentiation. This progress highlights the need for challenging benchmarks that provide objective verification. In this…

Computation and Language · Computer Science 2025-10-10 Hyeonseok Moon , Seongtae Hong , Jaehyung Seo , Heuiseok Lim

We introduce a comprehensive framework for modeling single cell transcriptomic responses to perturbations, aimed at standardizing benchmarking in this rapidly evolving field. Our approach includes a modular and user-friendly model…

Large language models (LLMs) are in the ascendancy for research in drug discovery, offering unprecedented opportunities to reshape drug research by accelerating hypothesis generation, optimizing candidate prioritization, and enabling more…

Machine Learning · Computer Science 2026-04-06 Tianyu Liu , Sihan Jiang , Fan Zhang , Kunyang Sun , Teresa Head-Gordon , Hongyu Zhao

Clinical reasoning in medicine is a hypothesis-driven process where physicians refine diagnoses from limited information through targeted history, physical examination, and diagnostic investigations. In contrast, current medical benchmarks…

Machine Learning · Computer Science 2025-10-14 Christopher Chiu , Silviu Pitis , Mihaela van der Schaar

Recent advancements in reasoning-enhanced large language models (LLMs), such as DeepSeek-R1 and OpenAI-o3, have demonstrated significant progress. However, their application in professional medical contexts remains underexplored,…

Computation and Language · Computer Science 2025-03-11 Pengcheng Qiu , Chaoyi Wu , Shuyu Liu , Weike Zhao , Zhuoxia Chen , Hongfei Gu , Chuanjin Peng , Ya Zhang , Yanfeng Wang , Weidi Xie

Automating the decision of whether a code change requires manual review is vital for maintaining software quality in modern development workflows. However, the emergence of new programming languages and frameworks creates a critical…

Software Engineering · Computer Science 2025-09-08 Yogev Cohen , Dudi Ohayon , Romy Somkin , Yehudit Aperstein , Alexander Apartsin

Writing code requires significant time and effort in software development. To automate this process, researchers have made substantial progress using Large Language Models (LLMs) for code generation. Many benchmarks like HumanEval and…

Software Engineering · Computer Science 2026-04-27 Jia Li , Hongyi Deng , Yiran Zhang , Kechi Zhang , Tianqi Shao , Tiankuo Zhao , Weinan Wang , Zhi Jin , Ge Li , Yang Liu , Yingtao Fang , Yihong Dong

While Large Language Models (LLMs) have evolved into tool-using agents, they remain brittle in long-horizon interactions. Unlike mathematical reasoning where errors are often rectifiable via backtracking, tool-use failures frequently induce…

Artificial Intelligence · Computer Science 2026-03-17 Shengda Fan , Xuyan Ye , Yupeng Huo , Zhi-Yuan Chen , Yiju Guo , Shenzhi Yang , Wenkai Yang , Shuqi Ye , Jingwen Chen , Haotian Chen , Xin Cong , Yankai Lin

Prompt Recovery, reconstructing prompts from the outputs of large language models (LLMs), has grown in importance as LLMs become ubiquitous. Most users access LLMs through APIs without internal model weights, relying only on outputs and…

Computation and Language · Computer Science 2025-04-08 Shenyang Liu , Yang Gao , Shaoyan Zhai , Liqiang Wang

Large Language Models (LLMs) have the potential to accelerate small molecule drug design due to their ability to reason about information from diverse sources and formats. However, their practical utility remains unclear due to the lack of…

We introduce SLR, an end-to-end framework for systematic evaluation and training of Large Language Models (LLMs) via Scalable Logical Reasoning. Given a user's task specification, SLR automatically synthesizes (i) an instruction prompt for…

Safety- and security-critical systems have to be thoroughly tested against their specifications. The state of practice is to have _natural language_ specifications, from which test cases are derived manually - a process that is slow,…

Software Engineering · Computer Science 2025-11-25 Kuangxiangzi Liu , Dhiman Chakraborty , Alexander Liggesmeyer , Andreas Zeller