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Contemporary graph learning algorithms are not well-defined for large molecules since they do not consider the hierarchical interactions among the atoms, which are essential to determine the molecular properties of macromolecules. In this…

Machine Learning · Computer Science 2023-08-02 Nhat Khang Ngo , Truong Son Hy , Risi Kondor

Large Language Models (LLMs) are increasingly applied to tasks involving structured inputs such as graphs. Abstract Meaning Representations (AMRs), which encode rich semantics as directed graphs, offer a rigorous testbed for evaluating LLMs…

Computation and Language · Computer Science 2025-12-11 Rafiq Kamel , Filippo Guerranti , Simon Geisler , Stephan Günnemann

The success of large pretrained Transformers is closely tied to tokenizers, which convert raw input into discrete symbols. Extending these models to graph-structured data remains a significant challenge. In this work, we introduce a graph…

Machine Learning · Computer Science 2026-03-13 Zeyuan Guo , Enmao Diao , Cheng Yang , Chuan Shi

Geometric deep learning (GDL) has demonstrated huge power and enormous potential in molecular data analysis. However, a great challenge still remains for highly efficient molecular representations. Currently, covalent-bond-based molecular…

Computational Physics · Physics 2023-06-28 Cong Shen , Jiawei Luo , Kelin Xia

Recently, MLP-based vision backbones have achieved promising performance in several visual recognition tasks. However, the existing MLP-based methods directly aggregate tokens with static weights, leaving the adaptability to different…

Computer Vision and Pattern Recognition · Computer Science 2023-09-18 Zhiqiang Hu , Tao Yu

Molecular graphs generally contain subgraphs (known as groups) that are identifiable and significant in composition, functionality, geometry, etc. Flat latent representations (node embeddings or graph embeddings) fail to represent, and…

Machine Learning · Computer Science 2019-04-05 Daniel T. Chang

High-Definition (HD) maps are needed for robust navigation of autonomous vehicles, limited by the on-board storage capacity. To solve this, we propose a novel framework, Environment-Aware Normal Distributions Transform (EA-NDT), that…

Robotics · Computer Science 2023-01-11 Petri Manninen , Heikki Hyyti , Ville Kyrki , Jyri Maanpää , Josef Taher , Juha Hyyppä

Large language models show great potential in unstructured data understanding, but still face significant challenges with graphs due to their structural hallucination. Existing approaches mainly either verbalize graphs into natural…

Computation and Language · Computer Science 2026-02-03 Jingyao Wu , Bin Lu , Zijun Di , Xiaoying Gan , Meng Jin , Luoyi Fu , Xinbing Wang , Chenghu Zhou

This work introduces Cross-Attentive Modulation (CAM) tokens, which are tokens whose initial value is learned, gather information through cross-attention, and modulate the nodes and edges accordingly. These tokens are meant to improve the…

Social and Information Networks · Computer Science 2024-09-23 Félix Marcoccia , Cédric Adjih , Paul Mühlethaler

The remarkable success of Large Language Models (LLMs) has extended to the multimodal domain, achieving outstanding performance in image understanding and generation. Recent efforts to develop unified Multimodal Large Language Models…

Computer Vision and Pattern Recognition · Computer Science 2024-12-13 Hao Li , Changyao Tian , Jie Shao , Xizhou Zhu , Zhaokai Wang , Jinguo Zhu , Wenhan Dou , Xiaogang Wang , Hongsheng Li , Lewei Lu , Jifeng Dai

Multi-modal neural machine translation (NMT) aims to translate source sentences into a target language paired with images. However, dominant multi-modal NMT models do not fully exploit fine-grained semantic correspondences between semantic…

Computation and Language · Computer Science 2020-07-20 Yongjing Yin , Fandong Meng , Jinsong Su , Chulun Zhou , Zhengyuan Yang , Jie Zhou , Jiebo Luo

Entity alignment (EA), a pivotal process in integrating multi-source Knowledge Graphs (KGs), seeks to identify equivalent entity pairs across these graphs. Most existing approaches regard EA as a graph representation learning task,…

Information Retrieval · Computer Science 2024-04-18 Yuanyi Wang , Haifeng Sun , Jingyu Wang , Qi Qi , Shaoling Sun , Jianxin Liao

Multimodal large language models (MLLMs) have advanced rapidly in recent years. However, existing approaches for vision tasks often rely on indirect representations, such as generating coordinates as text for detection, which limits…

Computer Vision and Pattern Recognition · Computer Science 2025-10-03 Yongyi Su , Haojie Zhang , Shijie Li , Nanqing Liu , Jingyi Liao , Junyi Pan , Yuan Liu , Xiaofen Xing , Chong Sun , Chen Li , Nancy F. Chen , Shuicheng Yan , Xulei Yang , Xun Xu

Text-image alignment constitutes a foundational challenge in multimedia content understanding, where effective modeling of cross-modal semantic correspondences critically enhances retrieval system performance through joint embedding space…

Computer Vision and Pattern Recognition · Computer Science 2025-10-16 Rongjun Chen , Chengsi Yao , Jinchang Ren , Xianxian Zeng , Peixian Wang , Jun Yuan , Jiawen Li , Huimin Zhao , Xu Lu

Electrode-electrolyte interfaces are crucial for electrochemical energy conversion and storage. At these interfaces, the liquid electrolytes form electrical double layers (EDLs). However, despite more than a century of active research, the…

Neural Networks (GNNs) have revolutionized the molecular discovery to understand patterns and identify unknown features that can aid in predicting biophysical properties and protein-ligand interactions. However, current models typically…

Machine Learning · Computer Science 2022-12-21 Carter Knutson , Gihan Panapitiya , Rohith Varikoti , Neeraj Kumar

Graph Transformer has demonstrated impressive capabilities in the field of graph representation learning. However, existing approaches face two critical challenges: (1) most models suffer from exponentially increasing computational…

Text-rich graphs, which exhibit rich textual information on nodes and edges, are prevalent across a wide range of real-world business applications. Large Language Models (LLMs) have demonstrated remarkable abilities in understanding text,…

Computation and Language · Computer Science 2024-04-30 Qi Zhu , Da Zheng , Xiang Song , Shichang Zhang , Bowen Jin , Yizhou Sun , George Karypis

We introduceGraphGPT, a novel self-supervised generative pre-trained model for graph learning based on the Graph Eulerian Transformer (GET). First, we propose GET, which combines a standard transformer encoder or decoder architecture with…

Machine Learning · Computer Science 2025-06-09 Qifang Zhao , Weidong Ren , Tianyu Li , Hong Liu , Xingsheng He , Xiaoxiao Xu

Latent Graph Inference (LGI) relaxed the reliance of Graph Neural Networks (GNNs) on a given graph topology by dynamically learning it. However, most of LGI methods assume to have a (noisy, incomplete, improvable, ...) input graph to rewire…

Machine Learning · Computer Science 2023-08-04 Claudio Battiloro , Indro Spinelli , Lev Telyatnikov , Michael Bronstein , Simone Scardapane , Paolo Di Lorenzo