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We outline a procedure for jointly sampling substitution matrices and multiple sequence alignments, according to an approximate posterior distribution, using an MCMC-based algorithm. This procedure provides an efficient and simple method by…

Quantitative Methods · Quantitative Biology 2015-01-22 Joseph L. Herman , Adrienn Szabó , Instván Miklós , Jotun Hein

We consider jointly estimating the coefficient matrix and the error precision matrix in high-dimensional multivariate linear regression models. Bayesian methods in this context often face computational challenges, leading to previous…

Methodology · Statistics 2025-08-25 Xuan Cao , Kyoungjae Lee

NISQ (Noisy, Intermediate-Scale Quantum) computing requires error mitigation to achieve meaningful computation. Our compilation tool development focuses on the fact that the error rates of individual qubits are not equal, with a goal of…

Quantum Physics · Physics 2020-06-04 Shin Nishio , Yulu Pan , Takahiko Satoh , Hideharu Amano , Rodney Van Meter

We present a novel scattering emulator utilizing the complex scaling method to enhance nuclear reaction analysis. This approach leverages a single set of reduced bases, allowing for efficient and simultaneous emulation across multiple…

Nuclear Theory · Physics 2024-10-24 Junzhe Liu , Jin Lei , Zhongzhou Ren

We show that assuming the availability of the processor with variable precision arithmetic, we can compute matrix-by-matrix multiplications in $O(N^2log_2N)$ computational complexity. We replace the standard matrix-by-matrix multiplications…

Data Structures and Algorithms · Computer Science 2025-08-19 Maciej Paszyński

Traditional optimization methods rely on the use of single-precision floating point arithmetic, which can be costly in terms of memory size and computing power. However, mixed precision optimization techniques leverage the use of both…

Machine Learning · Computer Science 2023-09-25 Basile Lewandowski , Atli Kosson

Recent work in machine learning community proposed multiple methods for performing lossy compression (quantization) of large matrices. This quantization is important for accelerating matrix multiplication (main component of large language…

Information Theory · Computer Science 2025-10-16 Or Ordentlich , Yury Polyanskiy

We give two algorithms for output-sparse matrix multiplication (OSMM), the problem of multiplying two $n \times n$ matrices $A, B$ when their product $AB$ is promised to have at most $O(n^{\delta})$ many non-zero entries for a given value…

Data Structures and Algorithms · Computer Science 2025-08-15 Huck Bennett , Karthik Gajulapalli , Alexander Golovnev , Evelyn Warton

We present a new algorithm for finding a near optimal low-rank approximation of a matrix $A$ in $O(nnz(A))$ time. Our method is based on a recursive sampling scheme for computing a representative subset of $A$'s columns, which is then used…

Data Structures and Algorithms · Computer Science 2016-10-10 Michael B. Cohen , Cameron Musco , Christopher Musco

Although reliable long precision floating-point arithmetic libraries such as QD and MPFR/GMP are necessary to solve ill-conditioned problems in numerical simulation, long precision BLAS-level computation such as matrix multiplication has…

Mathematical Software · Computer Science 2017-10-06 Tomonori Kouya

Fast algorithms for matrix multiplication, namely those that perform asymptotically fewer scalar operations than the classical algorithm, have been considered primarily of theoretical interest. Apart from Strassen's original algorithm, few…

Numerical Analysis · Computer Science 2016-07-26 Grey Ballard , Austin R. Benson , Alex Druinsky , Benjamin Lipshitz , Oded Schwartz

Matrix-matrix multiplication is a basic operation in linear algebra and an essential building block for a wide range of algorithms in various scientific fields. Theory and implementation for the dense, square matrix case are well-developed.…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-06-01 Alfio Lazzaro , Joost VandeVondele , Juerg Hutter , Ole Schuett

We use backward error analysis for differential equations to obtain modified or distorted equations describing the behaviour of the Newmark scheme applied to the transient structural dynamics equation. Based on the newly derived distorted…

Numerical Analysis · Mathematics 2024-11-12 Donát M. Takács , Tamás Fülöp

This work proposes a mathematically founded mixed precision accumulation strategy for the inference of neural networks. Our strategy is based on a new componentwise forward error analysis that explains the propagation of errors in the…

Machine Learning · Computer Science 2025-12-03 El-Mehdi El Arar , Silviu-Ioan Filip , Theo Mary , Elisa Riccietti

Iterative refinement (IR) is a popular scheme for solving a linear system of equations based on gradually improving the accuracy of an initial approximation. Originally developed to improve upon the accuracy of Gaussian elimination,…

Numerical Analysis · Mathematics 2025-06-24 Chai Wah Wu , Mark S. Squillante , Vasileios Kalantzis , Lior Horesh

Euclidean embedding from noisy observations containing outlier errors is an important and challenging problem in statistics and machine learning. Many existing methods would struggle with outliers due to a lack of detection ability. In this…

Machine Learning · Statistics 2020-12-24 Qian Zhang , Xinyuan Zhao , Chao Ding

We propose a penalized likelihood framework for estimating multiple precision matrices from different classes. Most existing methods either incorporate no information on relationships between the precision matrices, or require this…

Machine Learning · Statistics 2020-03-03 Bradley S. Price , Aaron J. Molstad , Ben Sherwood

Linear detectors such as zero forcing (ZF) or minimum mean square error (MMSE) are imperative for large/massive MIMO systems for both the downlink and uplink scenarios. However these linear detectors require matrix inversion which is…

Information Theory · Computer Science 2016-11-15 Vipul Gupta , Abhay Kumar Sah , A. K. Chaturvedi

Calculating dynamical diffraction patterns for X-ray topography and similar x-ray scattering-imaging techniques require the numerical integration of the Takagi-Taupin equations. This is usually performed with a simple second order finite…

Computational Physics · Physics 2022-02-24 Mads Carlsen , Hugh Simons

In-Memory Computing (IMC) introduces a new paradigm of computation that offers high efficiency in terms of latency and power consumption for AI accelerators. However, the non-idealities and defects of emerging technologies used in advanced…

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