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Tangles, as introduced by Robertson and Seymour, were designed as an indirect way of capturing clusters in graphs and matroids. They have since been shown to capture clusters in much broader discrete structures too. But not all tangles are…
This paper shows that the celebrated Embedding Theorem of Takens is a particular case of a much more general statement according to which, randomly generated linear state-space representations of generic observations of an invertible…
Smectic materials represent a unique state between fluids and solids, characterized by orientational and partial positional order, making them notoriously difficult to model, particularly in confining geometries. We propose a complex order…
This paper addresses the problem of finding cycles in the state transition graphs of synchronous Boolean networks. Synchronous Boolean networks are a class of deterministic finite state machines which are used for the modeling of gene…
Homological algebra of modules over posets is developed, as closely parallel as possible to that of finitely generated modules over noetherian commutative rings, in the direction of finite presentations and resolutions. Centrally at issue…
Processes are often viewed as coalgebras, with the structure maps specifying the state transitions. In the simplest case, the state spaces are discrete, and the structure map simply takes each state to the next states. But the coalgebraic…
Persistent homology analysis, a recently developed computational method in algebraic topology, is applied to the study of the phase transitions undergone by the so-called XY-mean field model and by the phi^4 lattice model, respectively. For…
Graph-based signal processing techniques have become essential for handling data in non-Euclidean spaces. However, there is a growing awareness that these graph models might need to be expanded into `higher-order' domains to effectively…
We introduce "state space persistence analysis" for deducing the symbolic dynamics of time series data obtained from high-dimensional chaotic attractors. To this end, we adapt a topological data analysis technique known as persistent…
Homological algebra is often understood as the translator between the world of topology and algebra. However, this branch of mathematics is worth studying by itself, given that it provides fascinating perspectives about other disciplines,…
In this work a new strategy is proposed in order to build analytic and microscopic models of fluctuating polymer rings subjected to topological constraints. The topological invariants used to fix these constraints belong to a wide class of…
This paper studies closed 3-manifolds which are the attractors of a system of finitely many affine contractions that tile $\mathbb{R}^3$. Such attractors are called self-affine tiles. Effective characterization and recognition theorems for…
Hypergraph is a topological model for networks. In order to study the topology of hypergraphs, the homology of the associated simplicial complexes and the embedded homology have been invented. In this paper, we give some algorithms to…
Two distinct structures of aggregates of atoms connected by anisotropic bonds with a network configuration are discussed from the viewpoint of a point set topology. A specific topological space connects the two types of topological…
Mapping time series onto graphs and the use of graph theory methods opens up the possibility to study the structure of the phase space manifolds underlying the fluctuations of a dynamical variable. Here, we propose to go beyond the standard…
We study Morse theory on noncompact manifolds equipped with exhaustions by compact pieces, defining the Morse homology of a pair which consists of the manifold and related geometric/homotopy data. We construct a collection of Morse data…
Much information about a graph can be obtained by studying its spanning trees. On the other hand, a graph can be regarded as a 1-dimensional cell complex, raising the question of developing a theory of trees in higher dimension. As observed…
We describe those complete linearly ordered topological spaces $X$ which are homogeneous (=CHLOTS). That is, $X$ is order isomorphic with any nonempty open interval in $X$. Using countable tail-like ordinals as indices, we build towers of…
In this paper we study the problem of determining the homology groups of a quotient of a topological space by an action of a group. The method is to represent the original topological space as a homotopy limit of a diagram, and then act…
A qualgebra $G$ is a set having two binary operations that satisfy compatibility conditions which are modeled upon a group under conjugation and multiplication. We develop a homology theory for qualgebras and describe a classifying space…