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Large language models (LLMs) are rapidly transforming various domains, including biomedicine and healthcare, and demonstrate remarkable potential from scientific research to new drug discovery. Graph-based retrieval-augmented generation…

Quantitative Methods · Quantitative Biology 2025-11-14 Guofeng Meng , Li Shen , Qiuyan Zhong , Wei Wang , Haizhou Zhang , Xiaozhen Wang

Employing pre-trained language models (LM) to extract contextualized word representations has achieved state-of-the-art performance on various NLP tasks. However, applying this technique to noisy transcripts generated by automatic speech…

Computation and Language · Computer Science 2020-11-03 Chao-Wei Huang , Yun-Nung Chen

Conventional end-to-end automatic speech recognition (ASR) systems rely on paired speech-text data for domain adaptation. Recent LLM-based ASR architectures connect a speech encoder to a large language model via a projection module,…

Automatic speech recognition (ASR) outcomes serve as input for downstream tasks, substantially impacting the satisfaction level of end-users. Hence, the diagnosis and enhancement of the vulnerabilities present in the ASR model bear…

Computation and Language · Computer Science 2024-01-29 Seonmin Koo , Chanjun Park , Jinsung Kim , Jaehyung Seo , Sugyeong Eo , Hyeonseok Moon , Heuiseok Lim

Question Answering (QA) is a widely-used framework for developing and evaluating an intelligent machine. In this light, QA on Electronic Health Records (EHR), namely EHR QA, can work as a crucial milestone towards developing an intelligent…

Databases · Computer Science 2021-08-03 Junwoo Park , Youngwoo Cho , Haneol Lee , Jaegul Choo , Edward Choi

Automatic Speech Recognition (ASR) in medical contexts has the potential to save time, cut costs, increase report accuracy, and reduce physician burnout. However, the healthcare industry has been slower to adopt this technology, in part due…

Audio and Speech Processing · Electrical Eng. & Systems 2024-03-14 Joel Shor , Ruyue Agnes Bi , Subhashini Venugopalan , Steven Ibara , Roman Goldenberg , Ehud Rivlin

Despite the remarkable progress in end-to-end Automatic Speech Recognition (ASR) engines, accurately transcribing dysarthric speech remains a major challenge. In this work, we proposed a two-stage framework for the Speech Accessibility…

Computation and Language · Computer Science 2025-05-27 Moreno La Quatra , Alkis Koudounas , Valerio Mario Salerno , Sabato Marco Siniscalchi

Large Language Models (LLMs), although powerful in general domains, often perform poorly on domain-specific tasks such as medical question answering (QA). In addition, LLMs tend to function as "black-boxes", making it challenging to modify…

Computation and Language · Computer Science 2024-08-19 Yucheng Shi , Shaochen Xu , Tianze Yang , Zhengliang Liu , Tianming Liu , Quanzheng Li , Xiang Li , Ninghao Liu

In recent years, Large Language Models (LLMs) have demonstrated an impressive ability to encode knowledge during pre-training on large text corpora. They can leverage this knowledge for downstream tasks like question answering (QA), even in…

Computation and Language · Computer Science 2024-06-11 Juraj Vladika , Phillip Schneider , Florian Matthes

Applications which use human speech as an input require a speech interface with high recognition accuracy. The words or phrases in the recognised text are annotated with a machine-understandable meaning and linked to knowledge graphs for…

Human-Computer Interaction · Computer Science 2017-05-26 Ashwini Jaya Kumar , Sören Auer , Christoph Schmidt , Joachim köhler

Interacting with a speech interface to query a Question Answering (QA) system is becoming increasingly popular. Typically, QA systems rely on passage retrieval to select candidate contexts and reading comprehension to extract the final…

Computation and Language · Computer Science 2022-09-28 Georgios Sidiropoulos , Svitlana Vakulenko , Evangelos Kanoulas

Electronic Medical Records (EMRs), while integral to modern healthcare, present challenges for clinical reasoning and diagnosis due to their complexity and information redundancy. To address this, we proposed medIKAL (Integrating Knowledge…

Computation and Language · Computer Science 2025-02-18 Mingyi Jia , Junwen Duan , Yan Song , Jianxin Wang

Large language models (LLMs) have recently emerged as powerful tools, finding many medical applications. LLMs' ability to coalesce vast amounts of information from many sources to generate a response-a process similar to that of a human…

Existing medical RAG systems mainly leverage knowledge from medical knowledge bases, neglecting the crucial role of experiential knowledge derived from similar patient cases -- a key component of human clinical reasoning. To bridge this…

Computation and Language · Computer Science 2025-05-27 Yuxing Lu , Gecheng Fu , Wei Wu , Xukai Zhao , Sin Yee Goi , Jinzhuo Wang

Large Language Models (LLMs) have demonstrated significant potential in medical Question Answering (QA), yet they remain prone to hallucinations and ungrounded reasoning, limiting their reliability in high-stakes clinical scenarios. While…

Information Retrieval · Computer Science 2026-01-09 Jessica Ryan , Alexander I. Gumilang , Robert Wiliam , Derwin Suhartono

Hypernasality is an abnormal resonance in human speech production, especially in patients with craniofacial anomalies such as cleft palate. In clinical application, hypernasality estimation is crucial in cleft palate diagnosis, as its…

Audio and Speech Processing · Electrical Eng. & Systems 2022-08-11 Kaitao Song , Teng Wan , Bixia Wang , Huiqiang Jiang , Luna Qiu , Jiahang Xu , Liping Jiang , Qun Lou , Yuqing Yang , Dongsheng Li , Xudong Wang , Lili Qiu

Biomedical queries often rely on a deep understanding of specialized knowledge such as gene regulatory mechanisms and pathological processes of diseases. They require detailed analysis of complex physiological processes and effective…

Computation and Language · Computer Science 2026-02-02 Congying Liu , Xingyuan Wei , Peipei Liu , Yiqing Shen , Yanxu Mao , Tiehan Cui

Large Language Models (LLMs) demonstrate remarkable capabilities, yet struggle with hallucination and outdated knowledge when tasked with complex knowledge reasoning, resulting in factually incorrect outputs. Previous studies have attempted…

Computation and Language · Computer Science 2025-01-07 Derong Xu , Xinhang Li , Ziheng Zhang , Zhenxi Lin , Zhihong Zhu , Zhi Zheng , Xian Wu , Xiangyu Zhao , Tong Xu , Enhong Chen

Automatic Speech Recognition (ASR) is increasingly used to document clinical encounters, yet its reliability in multilingual and demographically diverse Indian healthcare contexts remains largely unknown. In this study, we conduct the first…

Accurate and efficient question-answering systems are essential for delivering high-quality patient care in the medical field. While Large Language Models (LLMs) have made remarkable strides across various domains, they continue to face…

Computation and Language · Computer Science 2025-01-22 Hang Yang , Hao Chen , Hui Guo , Yineng Chen , Ching-Sheng Lin , Shu Hu , Jinrong Hu , Xi Wu , Xin Wang
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