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Can a micron sized sack of interacting molecules understand, and adapt to a constantly-fluctuating environment? Cellular life provides an existence proof in the affirmative, but the principles that allow for life's existence are far from…

Molecular Networks · Quantitative Biology 2022-05-16 William Poole , Thomas Ouldridge , Manoj Gopalkrishnan , Erik Winfree

Reservoir computing is a machine learning paradigm that uses a high-dimensional dynamical system, or \emph{reservoir}, to approximate and predict time series data. The scale, speed and power usage of reservoir computers could be enhanced by…

Neural and Evolutionary Computing · Computer Science 2022-11-16 Forrest C. Sheldon , Artemy Kolchinsky , Francesco Caravelli

High-dimensional nonlinear dynamical systems including neural networks can be utilized as a computational resource for information processing. In this sense, nonlinear wave systems are good candidate for such a computational resource. Here,…

Applied Physics · Physics 2019-07-30 Satoshi Sunada , Atsushi Uchida

We study an information engine operating in an active bath, where a Brownian particle confined in a harmonic trap undergoes feedback-driven displacement cycles. Unlike thermal environments, active baths exhibit temporally correlated…

Statistical Mechanics · Physics 2025-11-27 Sehoon Bahng , Jae Sung Lee , Cheol-Min Ghim

Natural plants are exemplars of adaptation through self-organisation and collective decision making. As such, they provide a rich source of inspiration for adaptive mechanisms in artificial systems. Plant growth - a structure development…

Electrochemical communication is a mechanism that enables intercellular interaction among bacteria within communities. Bacteria achieves synchronization and coordinates collective actions at the population level through the utilization of…

Information Theory · Computer Science 2024-03-15 Nithin V. Sabu , Bige Deniz Unluturk

The diffusion of active microscopic organisms in complex environments plays an important role in a wide range of biological phenomena from cell colony growth to single organism transport. Here, we investigate theoretically and…

Fluid Dynamics · Physics 2018-01-16 Juan L. Aragones , Shahrzad Yazdi , Alfredo Alexander-Katz

Regardless of the marked differences between biological and artificial neural systems, one fundamental similarity is that they are essentially dynamical systems that can learn to imitate other dynamical systems, without knowing their…

Neurons and Cognition · Quantitative Biology 2019-11-06 Zhixin Lu , Danielle S. Bassett

Understanding the binding dynamics of liquid molecules is of fundamental importance in physical and life sciences. However, nanoscale fast dynamics pose great challenges for experimental characterization. Conventionally, the binding…

Chemical Physics · Physics 2024-10-28 Shiyi Qin , Zhi Yang , Huimin Liu , Xiaoli Wang , Shangguo Hou , Kai Huang

Active matter consists of units that generate mechanical work by consuming energy. Examples include living systems, such as assemblies of bacteria and biological tissues, biopolymers driven by molecular motors, and suspensions of synthetic…

Soft Condensed Matter · Physics 2021-02-04 Song Liu , Suraj Shankar , M. Cristina Marchetti , Yilin Wu

As proposed by Hebb's theory, neural assemblies are groups of excitatory neurons that fire synchronously and exhibit high synaptic density, representing external stimuli and supporting cognitive functions such as language and…

Neurons and Cognition · Quantitative Biology 2026-04-16 Lucas Hoff , Gustavo Soroka , Matheus Guimarães , Aline Villavicencio , Marco Idiart

Manipulating particles, such as cells and tissues, in a flowing liquid environment is crucial for life science research. Traditional contactless tweezers, although widely used for single-cell manipulation, face several challenges. These…

Fluid Dynamics · Physics 2025-01-07 Yuhong Zhou , Fubao Yang , Jinrong Liu , Gaole Dai , Zixin Li , Xuzhi Zhou , Peng Jin , Jiping Huang

This work presents a new multi-chemical experimental platform for molecular communication where the transmitter can release different chemicals. This platform is designed to be inexpensive and accessible, and it can be expanded to simulate…

Emerging Technologies · Computer Science 2017-04-18 Nariman Farsad , David Pan , Andrea Goldsmith

Simulacra Naturae is a data-driven media installation that explores collective care through the entanglement of biological computation, material ecologies, and generative systems. The work translates pre-recorded neural activity from brain…

Multimedia · Computer Science 2025-09-04 Nefeli Manoudaki , Mert Toka , Iason Paterakis , Diarmid Flatley

We report a realization of an associative memory signal/information processing system based on simple enzyme-catalyzed biochemical reactions. Optically detected chemical output is always obtained in response to the triggering input, but the…

Molecular Networks · Quantitative Biology 2013-04-23 Vera Bocharova , Kevin MacVittie , Soujanya Chinnapareddy , Jan Halamek , Vladimir Privman , Evgeny Katz

Reservoir computing (RC) is an effective method for predicting chaotic systems by using a high-dimensional dynamic reservoir with fixed internal weights, while keeping the learning phase linear, which simplifies training and reduces…

Recurrent networks are a special class of artificial neural systems that use their internal states to perform computing tasks for machine learning. One of its state-of-the-art developments, i.e. reservoir computing (RC), uses the internal…

Disordered Systems and Neural Networks · Physics 2022-11-02 Valeria d'Andrea , Michele Puppin , Manlio De Domenico

The rising computational and energy demands of artificial intelligence systems urge the exploration of alternative software and hardware solutions that exploit physical effects for computation. According to machine learning theory, a neural…

Chaotic Dynamics · Physics 2025-04-11 Hend Abdel-Ghani , A. H. Abbas , Ivan S. Maksymov

How do non-neural organisms, such as the slime mould \textit{Physarum polycephalum}, anticipate periodic events in their environment? We present a minimal, biologically inspired reservoir model that demonstrates simple temporal anticipation…

Neurons and Cognition · Quantitative Biology 2025-05-06 Polyphony Bruna , Linnéa Gyllingberg

We consider the problem of designing synthetic cells to achieve a complex goal (e.g., mimicking the immune system by seeking invaders) in a complex environment (e.g., the circulatory system), where they might have to change their control…

Robotics · Computer Science 2020-03-10 Ana Pervan , Todd Murphey