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Cerebral X-ray digital subtraction angiography (DSA) is a widely used imaging technique in patients with neurovascular disease, allowing for vessel and flow visualization with high spatio-temporal resolution. Automatic artery-vein…

Deep learning-based whole-heart segmentation in coronary CT angiography (CCTA) allows the extraction of quantitative imaging measures for cardiovascular risk prediction. Automatic extraction of these measures in patients undergoing only…

Image and Video Processing · Electrical Eng. & Systems 2020-08-11 Steffen Bruns , Jelmer M. Wolterink , Richard A. P. Takx , Robbert W. van Hamersvelt , Dominika Suchá , Max A. Viergever , Tim Leiner , Ivana Išgum

Automatic extraction of liver and tumor from CT volumes is a challenging task due to their heterogeneous and diffusive shapes. Recently, 2D and 3D deep convolutional neural networks have become popular in medical image segmentation tasks…

Computer Vision and Pattern Recognition · Computer Science 2020-12-14 Qiangguo Jin , Zhaopeng Meng , Changming Sun , Leyi Wei , Ran Su

Advances in image registration and machine learning have recently enabled volumetric analysis of postmortem brain tissue from conventional photographs of coronal slabs, which are routinely collected in brain banks and neuropathology…

Monitoring the growth of subcortical regions of the fetal brain in ultrasound (US) images can help identify the presence of abnormal development. Manually segmenting these regions is a challenging task, but recent work has shown that it can…

Computer Vision and Pattern Recognition · Computer Science 2025-02-14 Joshua Omolegan , Pak Hei Yeung , Madeleine K. Wyburd , Linde Hesse , Monique Haak , Intergrowth-21st Consortium , Ana I. L. Namburete , Nicola K. Dinsdale

Age-related macular degeneration (AMD) is characterized by early micro-vascular alterations that can be captured non-invasively using optical coherence tomography angiography (OCTA), yet most deep learning (DL) models rely on global…

Computer Vision and Pattern Recognition · Computer Science 2026-03-10 Margalit G. Mitzner , Moinak Bhattacharya , Zhilin Zou , Chao Chen , Prateek Prasanna

Accurate segmentation of fetal brain magnetic resonance images is crucial for analyzing fetal brain development and detecting potential neurodevelopmental abnormalities. Traditional deep learning-based automatic segmentation, although…

Automated segmentation of medical imaging is of broad interest to clinicians and machine learning researchers alike. The goal of segmentation is to increase efficiency and simplicity of visualization and quantification of regions of…

Image and Video Processing · Electrical Eng. & Systems 2020-06-04 Shruti Jadon , Owen P. Leary , Ian Pan , Tyler J. Harder , David W. Wright , Lisa H. Merck , Derek L. Merck

Segmentation of indicated targets aids in the precise analysis of optical coherence tomography angiography (OCTA) samples. Existing segmentation methods typically perform on 2D projection targets, making it challenging to capture the…

Computer Vision and Pattern Recognition · Computer Science 2024-09-17 Xinrun Chen , Chengliang Wang , Haojian Ning , Mengzhan Zhang , Mei Shen , Shiying Li

We hereby present a full synthetic model, able to mimic the various constituents of the cerebral vascular tree: the cerebral arteries, the bifurcations and the intracranial aneurysms. By building this model, our goal was to provide a…

Image and Video Processing · Electrical Eng. & Systems 2024-03-28 Rafic Nader , Florent Autrusseau , Vincent L'Allinec , Romain Bourcier

Accurate vascular segmentation is essential for coronary visualization and the diagnosis of coronary heart disease. This task involves the extraction of sparse tree-like vascular branches from the volumetric space. However, existing methods…

Image and Video Processing · Electrical Eng. & Systems 2025-04-21 Bowen Liu , Chunlei Meng , Wei Lin , Hongda Zhang , Ziqing Zhou , Zhongxue Gan , Chun Ouyang

In the analysis of optical coherence tomography angiography (OCTA) images, the operation of segmenting specific targets is necessary. Existing methods typically train on supervised datasets with limited samples (approximately a few…

Computer Vision and Pattern Recognition · Computer Science 2023-09-22 Chengliang Wang , Xinrun Chen , Haojian Ning , Shiying Li

Accurate segmentation of brain vessels is crucial for cerebrovascular disease diagnosis and treatment. However, existing methods face challenges in capturing small vessels and handling datasets that are partially or ambiguously annotated.…

Image and Video Processing · Electrical Eng. & Systems 2023-08-08 Fengming Lin , Yan Xia , Nishant Ravikumar , Qiongyao Liu , Michael MacRaild , Alejandro F Frangi

We introduce a novel framework for learning vector representations of tree-structured geometric data focusing on 3D vascular networks. Our approach employs two sequentially trained Transformer-based autoencoders. In the first stage, the…

Image and Video Processing · Electrical Eng. & Systems 2025-06-16 James Batten , Michiel Schaap , Matthew Sinclair , Ying Bai , Ben Glocker

Automated brain tumour segmentation has the potential of making a massive improvement in disease diagnosis, surgery, monitoring and surveillance. However, this task is extremely challenging. Here, we describe our automated segmentation…

Image and Video Processing · Electrical Eng. & Systems 2020-05-13 Indrajit Mazumdar

Purpose: To develop and validate a computer tool for automatic and simultaneous segmentation of body composition depicted on computed tomography (CT) scans for the following tissues: visceral adipose (VAT), subcutaneous adipose (SAT),…

Image and Video Processing · Electrical Eng. & Systems 2021-12-17 Lucy Pu , Syed F. Ashraf , Naciye S Gezer , Iclal Ocak , Rajeev Dhupar

Segmentation of medical images is a fundamental task with numerous applications. While MRI, CT, and PET modalities have significantly benefited from deep learning segmentation techniques, more recent modalities, like functional ultrasound…

Image and Video Processing · Electrical Eng. & Systems 2025-07-24 Hana Sebia , Thomas Guyet , Mickaël Pereira , Marco Valdebenito , Hugues Berry , Benjamin Vidal

Accurate anatomical labeling of intracranial arteries is essential for cerebrovascular diagnosis and hemodynamic analysis but remains time-consuming and subject to interoperator variability. We present a deep learning-based framework for…

Fetal cortical plate segmentation is essential in quantitative analysis of fetal brain maturation and cortical folding. Manual segmentation of the cortical plate, or manual refinement of automatic segmentations is tedious and…

Computer Vision and Pattern Recognition · Computer Science 2021-04-05 Haoran Dou , Davood Karimi , Caitlin K. Rollins , Cynthia M. Ortinau , Lana Vasung , Clemente Velasco-Annis , Abdelhakim Ouaalam , Xin Yang , Dong Ni , Ali Gholipour

Automatic fetal brain tissue segmentation can enhance the quantitative assessment of brain development at this critical stage. Deep learning methods represent the state of the art in medical image segmentation and have also achieved…

Image and Video Processing · Electrical Eng. & Systems 2023-01-05 Davood Karimi , Caitlin K. Rollins , Clemente Velasco-Annis , Abdelhakim Ouaalam , Ali Gholipour