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We consider the task of learning a dynamical system from high-dimensional time-course data. For instance, we might wish to estimate a gene regulatory network from gene expression data measured at discrete time points. We model the dynamical…

Methodology · Statistics 2016-10-12 Shizhe Chen , Ali Shojaie , Daniela M. Witten

A useful approach to the mathematical analysis of large-scale biological networks is based upon their decompositions into monotone dynamical systems. This paper deals with two computational problems associated to finding decompositions…

Molecular Networks · Quantitative Biology 2007-05-23 Bhaskar DasGupta , German Andres Enciso , Eduardo Sontag , Yi Zhang

Structured pruning is a popular method for compressing a neural network: given a large trained network, one alternates between removing channel connections and fine-tuning; reducing the overall width of the network. However, the efficacy of…

Machine Learning · Statistics 2019-06-10 Elliot J. Crowley , Jack Turner , Amos Storkey , Michael O'Boyle

Deep learning stands as the modern paradigm for solving cognitive tasks. However, as the problem complexity increases, models grow deeper and computationally prohibitive, hindering advancements in real-world and resource-constrained…

Computer Vision and Pattern Recognition · Computer Science 2025-06-06 Gustavo Henrique do Nascimento , Ian Pons , Anna Helena Reali Costa , Artur Jordao

Our ability to manipulate the behavior of complex networks depends on the design of efficient control algorithms and, critically, on the availability of an accurate and tractable model of the network dynamics. While the design of control…

Systems and Control · Electrical Eng. & Systems 2021-04-28 Giacomo Baggio , Danielle S. Bassett , Fabio Pasqualetti

Clustering high-dimensional datasets is hard because interpoint distances become less informative in high-dimensional spaces. We present a clustering algorithm that performs nonlinear dimensionality reduction and clustering jointly. The…

Machine Learning · Computer Science 2018-03-06 Sohil Atul Shah , Vladlen Koltun

Dropout Regularization, serving to reduce variance, is nearly ubiquitous in Deep Learning models. We explore the relationship between the dropout rate and model complexity by training 2,000 neural networks configured with random…

Machine Learning · Computer Science 2021-08-30 Christopher Sun , Jai Sharma , Milind Maiti

This article presents a general framework for recovering missing dynamical systems using available data and machine learning techniques. The proposed framework reformulates the prediction problem as a supervised learning problem to…

Numerical Analysis · Mathematics 2020-10-20 John Harlim , Shixiao W. Jiang , Senwei Liang , Haizhao Yang

An increasing number of complex systems are now modeled as networks of coupled dynamical entities. Nonlinearity and high-dimensionality are hallmarks of the dynamics of such networks but have generally been regarded as obstacles to control.…

Disordered Systems and Neural Networks · Physics 2015-12-07 Adilson E. Motter

While modern deep networks have demonstrated remarkable versatility, their training dynamics remain poorly understood--often driven more by empirical tweaks than architectural insight. This paper investigates how internal structural choices…

Machine Learning · Computer Science 2025-08-26 Saleh Nikooroo , Thomas Engel

Random network models, constrained to reproduce specific statistical features, are often used to represent and analyze network data and their mathematical descriptions. Chief among them, the configuration model constrains random networks by…

Social and Information Networks · Computer Science 2025-01-28 Laurent Hébert-Dufresne , Jean-Gabriel Young , Alexander Daniels , Alec Kirkley , Antoine Allard

In comparison to classical shallow representation learning techniques, deep neural networks have achieved superior performance in nearly every application benchmark. But despite their clear empirical advantages, it is still not well…

Machine Learning · Computer Science 2022-01-11 Calvin Murdock , George Cazenavette , Simon Lucey

We propose a data-driven framework to simplify the description of spatiotemporal climate variability into few entities and their causal linkages. Given a high-dimensional climate field, the methodology first reduces its dimensionality into…

Atmospheric and Oceanic Physics · Physics 2024-04-08 Fabrizio Falasca , Pavel Perezhogin , Laure Zanna

In recent years, machine learning methods have been widely used to study physical systems that are challenging to solve with governing equations. Physicists and engineers are framing the data-driven paradigm as an alternative approach to…

Computational Physics · Physics 2020-07-02 Jong-Hoon Ahn

The discovery of governing equations from scientific data has the potential to transform data-rich fields that lack well-characterized quantitative descriptions. Advances in sparse regression are currently enabling the tractable…

Other Statistics · Statistics 2022-06-08 Kathleen Champion , Bethany Lusch , J. Nathan Kutz , Steven L. Brunton

The structure of a complex network plays a crucial role in determining its dynamical properties. In this work, we show that the the degree to which a network is directed and hierarchically organised is closely associated with the degree to…

This script offers an implementation-oriented introduction to deep learning methods for solving and estimating high-dimensional dynamic stochastic models in economics and finance. Its starting point is the curse of dimensionality:…

General Economics · Economics 2026-05-15 Simon Scheidegger

The importance of structured, complex connectivity patterns found in several real-world systems is to a great extent related to their respective effects in constraining and even defining the respective dynamics. Yet, while complex networks…

Tissues and Organs · Quantitative Biology 2008-05-16 Matheus P. Viana , Bruno A. N. Travencolo , E. Tanck , Luciano da F. Costa

Model quantization, which aims to compress deep neural networks and accelerate inference speed, has greatly facilitated the development of cumbersome models on mobile and edge devices. There is a common assumption in quantization methods…

Computer Vision and Pattern Recognition · Computer Science 2023-09-26 Yuzhang Shang , Bingxin Xu , Gaowen Liu , Ramana Kompella , Yan Yan

Many dynamical processes of complex systems can be understood as the dynamics of a group of nodes interacting on a given network structure. However, finding such interaction structure and node dynamics from time series of node behaviours is…

Physics and Society · Physics 2022-06-28 Yan Zhang , Yu Guo , Zhang Zhang , Mengyuan Chen , Shuo Wang , Jiang Zhang
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