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Dynamic graph representation learning has emerged as a crucial research area, driven by the growing need for analyzing time-evolving graph data in real-world applications. While recent approaches leveraging recurrent neural networks (RNNs)…

Machine Learning · Computer Science 2024-10-28 Shengxiang Hu , Guobing Zou , Song Yang , Shiyi Lin , Yanglan Gan , Bofeng Zhang

Heterogeneous graphs, comprising diverse node and edge types connected through varied relations, are ubiquitous in real-world applications. Message-passing heterogeneous graph neural networks (HGNNs) have emerged as a powerful model class…

Machine Learning · Computer Science 2025-12-10 Junwei Su , Lingjun Mao , Zheng Da , Chuan Wu

We introduce MAGNET, an open-source Python library designed for mesh agglomeration in both two- and three-dimensions, based on employing Graph Neural Networks (GNN). MAGNET serves as a comprehensive solution for training a variety of GNN…

Numerical Analysis · Mathematics 2025-10-27 Paola F. Antonietti , Matteo Caldana , Ilario Mazzieri , Andrea Re Fraschini

Recently, many mesh-based graph neural network (GNN) models have been proposed for modeling complex high-dimensional physical systems. Remarkable achievements have been made in significantly reducing the solving time compared to traditional…

Graph neural networks (GNNs) are typically applied to static graphs that are assumed to be known upfront. This static input structure is often informed purely by insight of the machine learning practitioner, and might not be optimal for the…

We introduce Attention Graphs, a new tool for mechanistic interpretability of Graph Neural Networks (GNNs) and Graph Transformers based on the mathematical equivalence between message passing in GNNs and the self-attention mechanism in…

Machine Learning · Computer Science 2025-02-26 Batu El , Deepro Choudhury , Pietro Liò , Chaitanya K. Joshi

Graph Neural Networks (GNNs), especially message-passing neural networks (MPNNs), have emerged as powerful architectures for learning on graphs in diverse applications. However, MPNNs face challenges when modeling non-local interactions in…

Machine Learning · Statistics 2024-01-31 Ilyes Batatia , Lars L. Schaaf , Huajie Chen , Gábor Csányi , Christoph Ortner , Felix A. Faber

The era of "data deluge" has sparked renewed interest in graph-based learning methods and their widespread applications ranging from sociology and biology to transportation and communications. In this context of graph-aware methods, the…

Machine Learning · Computer Science 2020-12-30 Vassilis N. Ioannidis , Antonio G. Marques , Georgios B. Giannakis

State-of-the-art deep learning models have been extensively utilized to reconstruct small-scale structures from coarse-grained data in turbulent flows. However, their application has predominantly been restricted to structured uniform…

Fluid Dynamics · Physics 2026-03-03 Priyabrat Dash , Konduri Aditya , Christos E. Frouzakis , Mathis Bode

Though U-Net has achieved tremendous success in medical image segmentation tasks, it lacks the ability to explicitly model long-range dependencies. Therefore, Vision Transformers have emerged as alternative segmentation structures recently,…

Image and Video Processing · Electrical Eng. & Systems 2021-11-12 Hongyi Wang , Shiao Xie , Lanfen Lin , Yutaro Iwamoto , Xian-Hua Han , Yen-Wei Chen , Ruofeng Tong

Numerical simulators are essential tools in the study of natural fluid-systems, but their performance often limits application in practice. Recent machine-learning approaches have demonstrated their ability to accelerate spatio-temporal…

Fluid Dynamics · Physics 2022-05-06 Mario Lino , Stathi Fotiadis , Anil A. Bharath , Chris Cantwell

Many irregular domains such as social networks, financial transactions, neuron connections, and natural language constructs are represented using graph structures. In recent years, a variety of graph neural networks (GNNs) have been…

Machine Learning · Computer Science 2021-05-03 Osman Asif Malik , Shashanka Ubaru , Lior Horesh , Misha E. Kilmer , Haim Avron

A key scalability challenge in neural solvers for industrial-scale physics simulations is efficiently capturing both fine-grained local interactions and long-range global dependencies across millions of spatial elements. We introduce the…

Machine Learning · Computer Science 2026-03-10 Pedro M. P. Curvo , Jan-Willem van de Meent , Maksim Zhdanov

Machining process planning (MP) is inherently complex due to structural and geometrical dependencies among part features and machining operations. A key challenge lies in capturing dynamic interdependencies that evolve with distinct part…

Computer Vision and Pattern Recognition · Computer Science 2025-11-18 Fatemeh Elhambakhsh , Gaurav Ameta , Aditi Roy , Hyunwoong Ko

Graph Neural Networks (GNNs) have shown promising potential in graph representation learning. The majority of GNNs define a local message-passing mechanism, propagating information over the graph by stacking multiple layers. These methods,…

Machine Learning · Computer Science 2024-02-20 Ali Behrouz , Farnoosh Hashemi

Graph representation learning has rapidly emerged as a pivotal field of study. Despite its growing popularity, the majority of research has been confined to embedding single-layer graphs, which fall short in representing complex systems…

Machine Learning · Computer Science 2024-03-29 Marco Bongiovanni , Luca Gallo , Roberto Grasso , Alfredo Pulvirenti

Graph convolutional learning has led to many exciting discoveries in diverse areas. However, in some applications, traditional graphs are insufficient to capture the structure and intricacies of the data. In such scenarios, multigraphs…

Machine Learning · Computer Science 2023-04-26 Landon Butler , Alejandro Parada-Mayorga , Alejandro Ribeiro

Graph neural networks (GNNs) are a class of deep models that operate on data with arbitrary topology represented as graphs. We introduce an efficient memory layer for GNNs that can jointly learn node representations and coarsen the graph.…

Machine Learning · Computer Science 2020-06-11 Amir Hosein Khasahmadi , Kaveh Hassani , Parsa Moradi , Leo Lee , Quaid Morris

In recent years, Graph Neural Networks (GNNs) have demonstrated strong adaptability to various real-world challenges, with architectures such as Vision GNN (ViG) achieving state-of-the-art performance in several computer vision tasks.…

Computer Vision and Pattern Recognition · Computer Science 2024-10-02 Gabriele Spadaro , Marco Grangetto , Attilio Fiandrotti , Enzo Tartaglione , Jhony H. Giraldo

We present a graph neural network (GNN) based surrogate framework for molecular dynamics simulations that directly predicts atomic displacements and learns the underlying evolution operator of an atomistic system. Unlike conventional…

Materials Science · Physics 2025-12-29 Judah Immanuel , Avik Mahata , Aniruddha Maiti