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The structural design of functional molecules, also called molecular optimization, is an essential chemical science and engineering task with important applications, such as drug discovery. Deep generative models and combinatorial…

Machine Learning · Computer Science 2022-01-25 Tianfan Fu , Wenhao Gao , Cao Xiao , Jacob Yasonik , Connor W. Coley , Jimeng Sun

Accurate segmentation of tubular and curvilinear structures, such as blood vessels, neurons, and road networks, is crucial in various applications. A key challenge is ensuring topological correctness while maintaining computational…

Image and Video Processing · Electrical Eng. & Systems 2025-03-21 Siyi Wu , Leyi Zhao , Haotian Ma , Xinyuan Song

We present a differentiation framework for plane-wave density-functional theory (DFT) that combines the strengths of forward-mode algorithmic differentiation (AD) and density-functional perturbation theory (DFPT). In the resulting AD-DFPT…

Materials Science · Physics 2025-12-23 Niklas Frederik Schmitz , Bruno Ploumhans , Michael F. Herbst

Purpose: Proximal femur image analyses based on quantitative computed tomography (QCT) provide a method to quantify the bone density and evaluate osteoporosis and risk of fracture. We aim to develop a deep-learning-based method for…

Computational materials discovery is limited by the high cost of first-principles calculations. Machine learning (ML) potentials that predict energies from crystal structures are promising, but existing methods face computational…

We propose GeoNet, a jointly unsupervised learning framework for monocular depth, optical flow and ego-motion estimation from videos. The three components are coupled by the nature of 3D scene geometry, jointly learned by our framework in…

Computer Vision and Pattern Recognition · Computer Science 2018-03-13 Zhichao Yin , Jianping Shi

Effectively predicting molecular interactions has the potential to accelerate molecular dynamics by multiple orders of magnitude and thus revolutionize chemical simulations. Graph neural networks (GNNs) have recently shown great successes…

Computational Physics · Physics 2024-06-25 Johannes Gasteiger , Florian Becker , Stephan Günnemann

Purpose: The goal of this study is to develop a novel deep learning (DL) based reconstruction framework to improve the digital breast tomosynthesis (DBT) imaging performance. Methods: In this work, the DIR-DBTnet is developed for DBT image…

Medical Physics · Physics 2021-06-09 Ting Su , Xiaolei Deng , Zhenwei Wang , Jiecheng Yang , Jianwei Chen , Hairong Zheng , Dong Liang , Yongshuai Ge

In component shape optimization, the component properties are often evaluated by computationally expensive simulations. Such optimization becomes unfeasible when it is focused on a global search requiring thousands of simulations to be…

Computational Engineering, Finance, and Science · Computer Science 2025-12-08 Lucie Kubíčková , Onřej Gebouský , Jan Haidl , Martin Isoz

We present a three-dimensional graph convolutional network (3DGCN), which predicts molecular properties and biochemical activities, based on 3D molecular graph. In the 3DGCN, graph convolution is unified with learning operations on the…

Machine Learning · Computer Science 2019-08-08 Hyeoncheol Cho , Insung S. Choi

Deploying 3D graph neural networks (GNNs) that are equivariant to 3D rotations (the group SO(3)) on edge devices is challenging due to their high computational cost. This paper addresses the problem by compressing and accelerating an…

Machine Learning · Computer Science 2026-03-04 Haoyu Zhou , Ping Xue , Hao Zhang , Tianfan Fu

Formation mechanisms are fundamental to the study of complex networks, but learning them from observations is challenging. In real-world domains, one often has access only to the final constructed graph, instead of the full construction…

Machine Learning · Computer Science 2020-07-08 Rakshit Trivedi , Jiachen Yang , Hongyuan Zha

3D object reconstruction from a single-view image is a long-standing challenging problem. Previous work was difficult to accurately reconstruct 3D shapes with a complex topology which has rich details at the edges and corners. Moreover,…

Computer Vision and Pattern Recognition · Computer Science 2020-11-24 Lei Li , Suping Wu

Accurate food nutrition estimation from single images is challenging due to the loss of 3D information. While depth-based methods provide reliable geometry, they remain inaccessible on most smartphones because of depth-sensor requirements.…

Computer Vision and Pattern Recognition · Computer Science 2025-12-30 Darrin Bright , Rakshith Raj , Kanchan Keisham

Predicting the binding sites of target proteins plays a fundamental role in drug discovery. Most existing deep-learning methods consider a protein as a 3D image by spatially clustering its atoms into voxels and then feed the voxelized…

Biomolecules · Quantitative Biology 2024-07-24 Yang Zhang , Zhewei Wei , Ye Yuan , Chongxuan Li , Wenbing Huang

The task of predicting smooth and edge-consistent depth maps is notoriously difficult for single image depth estimation. This paper proposes a novel Bilateral Grid based 3D convolutional neural network, dubbed as 3DBG-UNet, that…

Computer Vision and Pattern Recognition · Computer Science 2021-05-24 Mansi Sharma , Abheesht Sharma , Kadvekar Rohit Tushar , Avinash Panneer

We develop DeepOPF as a Deep Neural Network (DNN) approach for solving security-constrained direct current optimal power flow (SC-DCOPF) problems, which are critical for reliable and cost-effective power system operation.DeepOPF is inspired…

Systems and Control · Electrical Eng. & Systems 2020-09-24 Xiang Pan , Tianyu Zhao , Minghua Chen , Shengyu Zhang

In recent years, self-supervised methods for monocular depth estimation has rapidly become an significant branch of depth estimation task, especially for autonomous driving applications. Despite the high overall precision achieved, current…

Computer Vision and Pattern Recognition · Computer Science 2020-09-10 Feng Xue , Guirong Zhuo , Ziyuan Huang , Wufei Fu , Zhuoyue Wu , Marcelo H. Ang

The pretraining-finetuning paradigm has powered major advances in domains such as natural language processing and computer vision, with representative examples including masked language modeling and next-token prediction. In molecular…

Machine Learning · Computer Science 2025-10-21 Shaoheng Yan , Zian Li , Muhan Zhang

In Fringe Projection Profilometry (FPP), achieving robust and accurate 3D reconstruction with a limited number of fringe patterns remains a challenge in structured light 3D imaging. Conventional methods require a set of fringe images, but…

Computer Vision and Pattern Recognition · Computer Science 2024-02-05 Won-Hoe Kim , Bongjoong Kim , Hyung-Gun Chi , Jae-Sang Hyun
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