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Exploring the application of large language models (LLMs) to graph learning is a emerging endeavor. However, the vast amount of information inherent in large graphs poses significant challenges to this process. This work focuses on the link…

Computation and Language · Computer Science 2024-02-21 Baolong Bi , Shenghua Liu , Yiwei Wang , Lingrui Mei , Xueqi Cheng

Graph neural networks (GNNs) model nonlinear representations in graph data with applications in distributed agent coordination, control, and planning among others. Current GNN architectures assume ideal scenarios and ignore link…

Signal Processing · Electrical Eng. & Systems 2021-09-01 Zhan Gao , Elvin Isufi , Alejandro Ribeiro

Stochastic Block Models (SBMs) are a popular approach to modeling single real-world graphs. The key idea of SBMs is to partition the vertices of the graph into blocks with similar edge densities within, as well as between different blocks.…

Social and Information Networks · Computer Science 2024-12-23 Iiro Kumpulainen , Sebastian Dalleiger , Jilles Vreeken , Nikolaj Tatti

Link prediction aims to estimate the likelihood of connections between pairs of nodes in complex networks, which is beneficial to many applications from friend recommendation to metabolic network reconstruction. Traditional heuristic-based…

Social and Information Networks · Computer Science 2025-04-30 Ke-ke Shang , Junfan Yi , Michael Small , Yijie Zhou

Temporal Knowledge Graph (TKG) reasoning that forecasts future events based on historical snapshots distributed over timestamps is denoted as extrapolation and has gained significant attention. Owing to its extreme versatility and variation…

Artificial Intelligence · Computer Science 2024-07-01 Jinchuan Zhang , Bei Hui , Chong Mu , Ling Tian

Identifying transcription factor binding sites (TFBS) is crucial for understanding gene regulation, as these sites enable transcription factors (TFs) to bind to DNA and modulate gene expression. Despite advances in high-throughput…

Machine Learning · Computer Science 2025-03-18 Jonas Chris Ferrao , Dickson Dias , Sweta Morajkar , Manisha Gokuldas Fal Dessai

Graph neural networks (GNNs) have shown great potential in learning on graphs, but they are known to perform sub-optimally on link prediction tasks. Existing GNNs are primarily designed to learn node-wise representations and usually fail to…

Machine Learning · Computer Science 2025-06-17 Tianyi Zhang , Haoteng Yin , Rongzhe Wei , Pan Li , Anshumali Shrivastava

Large Language Models (LLMs) have shown promising results on various language and vision tasks. Recently, there has been growing interest in applying LLMs to graph-based tasks, particularly on Text-Attributed Graphs (TAGs). However, most…

Machine Learning · Computer Science 2024-06-10 Zhongmou He , Jing Zhu , Shengyi Qian , Joyce Chai , Danai Koutra

Most real-world networks evolve over time. Existing literature proposes models for dynamic networks that are either unlabeled or assumed to have a single membership structure. On the other hand, a new family of Mixed Membership Stochastic…

Machine Learning · Computer Science 2023-04-13 Gaël Poux-Médard , Julien Velcin , Sabine Loudcher

Large Language Models (LLMs) have demonstrated strong capabilities in various natural language processing tasks; however, their application to graph-related problems remains limited, primarily due to scalability constraints and the absence…

Machine Learning · Computer Science 2025-05-08 Hyun Lee , Chris Yi , Maminur Islam , B. D. S. Aritra

Community detection is a fundamental task in graph analysis, with methods often relying on fitting models like the Stochastic Block Model (SBM) to observed networks. While many algorithms can accurately estimate SBM parameters when the…

Machine Learning · Statistics 2025-06-05 Leonardo Martins Bianco , Christine Keribin , Zacharie Naulet

Recent years have witnessed the emerging success of graph neural networks (GNNs) for modeling structured data. However, most GNNs are designed for homogeneous graphs, in which all nodes and edges belong to the same types, making them…

Machine Learning · Computer Science 2020-03-04 Ziniu Hu , Yuxiao Dong , Kuansan Wang , Yizhou Sun

The availability of relational data can offer new insights into the functioning of the economy. Nevertheless, modeling the dynamics in network data with multiple types of relationships is still a challenging issue. Stochastic block models…

Methodology · Statistics 2025-08-01 Ovielt Baltodano López , Roberto Casarin

A framework based on generalized hierarchical random graphs (GHRGs) for the detection of change points in the structure of temporal networks has recently been developed by Peel and Clauset [1]. We build on this methodology and extend it to…

Social and Information Networks · Computer Science 2016-11-18 Simon De Ridder , Benjamin Vandermarliere , Jan Ryckebusch

Current statistical models for structured prediction make simplifying assumptions about the underlying output graph structure, such as assuming a low-order Markov chain, because exact inference becomes intractable as the tree-width of the…

Machine Learning · Computer Science 2010-03-26 Xu Miao , Rajesh P. N. Rao

Temporal link prediction in dynamic graphs is a critical task with applications in diverse domains such as social networks, recommendation systems, and e-commerce platforms. While existing Temporal Graph Neural Networks (T-GNNs) have…

Artificial Intelligence · Computer Science 2025-07-21 Haoyang Li , Yuming Xu , Yiming Li , Hanmo Liu , Darian Li , Chen Jason Zhang , Lei Chen , Qing Li

Network analysis has been a powerful tool to unveil relationships and interactions among a large number of objects. Yet its effectiveness in accurately identifying important node-node interactions is challenged by the rapidly growing…

Machine Learning · Statistics 2024-10-07 Tianxi Cai , Dong Xia , Luwan Zhang , Doudou Zhou

Stochastic block models (SBMs) are often used to find assortative community structures in networks, such that the probability of connections within communities is higher than in between communities. However, classic SBMs are not limited to…

Social and Information Networks · Computer Science 2020-04-27 Daniel Gribel , Thibaut Vidal , Michel Gendreau

Future link prediction is a fundamental challenge in various real-world dynamic systems. To address this, numerous temporal graph neural networks (temporal GNNs) and benchmark datasets have been developed. However, these datasets often…

Machine Learning · Computer Science 2025-03-18 Lu Yi , Jie Peng , Yanping Zheng , Fengran Mo , Zhewei Wei , Yuhang Ye , Yue Zixuan , Zengfeng Huang

Modeling relations between individuals is a classical question in social sciences, ecology, etc. In order to uncover a latent structure in the data, a popular approach consists in clustering individuals according to the observed patterns of…

Methodology · Statistics 2020-02-28 Avner Bar-Hen , Pierre Barbillon , Sophie Donnet