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Although biomedical entity linking (BioEL) has made significant progress with pre-trained language models, challenges still exist for fine-grained and long-tailed entities. To address these challenges, we present BioELQA, a novel model that…

Computation and Language · Computer Science 2024-05-20 Zhenxi Lin , Ziheng Zhang , Xian Wu , Yefeng Zheng

The growing prevalence and complexity of mental health disorders present significant challenges for accurate diagnosis and treatment, particularly in understanding the interplay between co-occurring conditions. Mental health disorders, such…

Artificial Intelligence · Computer Science 2024-12-06 Abdelrahaman A. Hassan , Radwa J. Hanafy , Mohammed E. Fouda

Semantic segmentation is a crucial task in medical imaging. Although supervised learning techniques have proven to be effective in performing this task, they heavily depend on large amounts of annotated training data. The recently…

Computer Vision and Pattern Recognition · Computer Science 2024-11-20 Ron Keuth , Lasse Hansen , Maren Balks , Ronja Jäger , Anne-Nele Schröder , Ludger Tüshaus , Mattias Heinrich

We present BEEP (Biomedical Evidence-Enhanced Predictions), a novel approach for clinical outcome prediction that retrieves patient-specific medical literature and incorporates it into predictive models. Based on each individual patient's…

Computation and Language · Computer Science 2022-11-17 Aakanksha Naik , Sravanthi Parasa , Sergey Feldman , Lucy Lu Wang , Tom Hope

With the growing use of language models (LMs) in clinical environments, there is an immediate need to evaluate the accuracy and safety of LM-generated medical text. Currently, such evaluation relies solely on manual physician review.…

With the improved performance of deep learning, the number of studies trying to apply deep learning to human emotion analysis is increasing rapidly. But even with this trend going on, it is still difficult to obtain high-quality images and…

Machine Learning · Computer Science 2022-08-23 Hyungjun Lee , Hwangyu Lim , Sejoon Lim

Synthetic clinical data are increasingly important for advancing AI in healthcare, given strict privacy constraints on real-world EHRs, limited availability of annotated rare-condition data, and systemic biases in observational datasets.…

Machine Learning · Computer Science 2025-09-16 Rumeng Li , Xun Wang , Hong Yu

Deep learning based medical image recognition systems often require a substantial amount of training data with expert annotations, which can be expensive and time-consuming to obtain. Recently, synthetic augmentation techniques have been…

Computer Vision and Pattern Recognition · Computer Science 2023-08-09 Jiarong Ye , Haomiao Ni , Peng Jin , Sharon X. Huang , Yuan Xue

Cross-domain knowledge alignment is essential for integrating heterogeneous medical systems, yet existing approaches typically treat entity alignment as a static matching problem, ignoring query context and cross-system asymmetry. This…

Artificial Intelligence · Computer Science 2026-05-19 Yan Jiao , Jingran Xu , Pin-Han Ho , Limei Peng

Recent advances in Text-to-SQL have largely focused on the SQLite dialect, neglecting the diverse landscape of SQL dialects like BigQuery and PostgreSQL. This limitation is due to the diversity in SQL syntaxes and functions, along with the…

Artificial Intelligence · Computer Science 2024-10-04 Mohammadreza Pourreza , Ruoxi Sun , Hailong Li , Lesly Miculicich , Tomas Pfister , Sercan O. Arik

Vision-extended LLMs have made significant strides in Visual Question Answering (VQA). Despite these advancements, VLLMs still encounter substantial difficulties in handling queries involving long-tail entities, with a tendency to produce…

Computer Vision and Pattern Recognition · Computer Science 2024-03-08 Jielin Qiu , Andrea Madotto , Zhaojiang Lin , Paul A. Crook , Yifan Ethan Xu , Xin Luna Dong , Christos Faloutsos , Lei Li , Babak Damavandi , Seungwhan Moon

Sentence embeddings have become an essential part of today's natural language processing (NLP) systems, especially together advanced deep learning methods. Although pre-trained sentence encoders are available in the general domain, none…

Computation and Language · Computer Science 2020-01-28 Qingyu Chen , Yifan Peng , Zhiyong Lu

Medical image annotation typically requires expert knowledge and hence incurs time-consuming and expensive data annotation costs. To alleviate this burden, we propose a novel learning scenario, Exemplar Learning (EL), to explore automated…

Image and Video Processing · Electrical Eng. & Systems 2022-10-11 Qing En , Yuhong Guo

Survival analysis stands as a pivotal process in cancer treatment research, crucial for predicting patient survival rates accurately. Recent advancements in data collection techniques have paved the way for enhancing survival predictions by…

Machine Learning · Computer Science 2024-07-26 Linhao Qu , Dan Huang , Shaoting Zhang , Xiaosong Wang

Paired image-text data with subtle variations in-between (e.g., people holding surfboards vs. people holding shovels) hold the promise of producing Vision-Language Models with proper compositional understanding. Synthesizing such training…

Computer Vision and Pattern Recognition · Computer Science 2025-04-01 Haoxin Li , Boyang Li

Biomedical entity linking is the task of identifying mentions of biomedical concepts in text documents and mapping them to canonical entities in a target thesaurus. Recent advancements in entity linking using BERT-based models follow a…

Computation and Language · Computer Science 2021-03-10 Rajarshi Bhowmik , Karl Stratos , Gerard de Melo

Pixel-level vision tasks, such as semantic segmentation, require extensive and high-quality annotated data, which is costly to obtain. Semi-supervised semantic segmentation (SSSS) has emerged as a solution to alleviate the labeling burden…

Computer Vision and Pattern Recognition · Computer Science 2025-07-22 Danhui Chen , Ziquan Liu , Chuxi Yang , Dan Wang , Yan Yan , Yi Xu , Xiangyang Ji

An increasing number of public datasets have shown a transformative impact on automated medical segmentation. However, these datasets are often with varying label quality, ranging from manual expert annotations to AI-generated…

Computer Vision and Pattern Recognition · Computer Science 2024-06-04 Yixiong Chen , Zongwei Zhou , Alan Yuille

While Large Language Models (LLMs) excel at generalized reasoning, standard retrieval-augmented approaches fail to address the disconnected nature of long-term agentic memory. To bridge this gap, we introduce Synapse (Synergistic…

Computation and Language · Computer Science 2026-02-17 Hanqi Jiang , Junhao Chen , Yi Pan , Ling Chen , Weihang You , Yifan Zhou , Ruidong Zhang , Andrea Sikora , Lin Zhao , Yohannes Abate , Tianming Liu

Large Language Models (LLMs) have shown promising potential in the medical domain, assisting with tasks like clinical note generation and patient communication. However, current LLMs are limited to text-based communication, hindering their…

Computation and Language · Computer Science 2025-06-17 Yusheng Liao , Shuyang Jiang , Yanfeng Wang , Yu Wang