Related papers: LvD: A New Algorithm for Computing the Likelihood …
This paper studies parallel algorithms for the longest increasing subsequence (LIS) problem. Let $n$ be the input size and $k$ be the LIS length of the input. Sequentially, LIS is a simple problem that can be solved using dynamic…
A distributed network is modeled by a graph having $n$ nodes (processors) and diameter $D$. We study the time complexity of approximating {\em weighted} (undirected) shortest paths on distributed networks with a $O(\log n)$ {\em bandwidth…
This paper presents a new technique for deterministic length reduction. This technique improves the running time of the algorithm presented in \cite{LR07} for performing fast convolution in sparse data. While the regular fast convolution of…
Identifying a subset of taxa that maximizes Phylogenetic Diversity (PD) is a cornerstone of quantitative conservation planning. Traditionally, PD is defined over a phylogenetic tree in which leaves resemble present-day taxa and the branch…
We provide a new convergence analysis of stochastic gradient Langevin dynamics (SGLD) for sampling from a class of distributions that can be non-log-concave. At the core of our approach is a novel conductance analysis of SGLD using an…
We present new distributed algorithms for constructing a Steiner Forest in the CONGEST model. Our deterministic algorithm finds, for any given constant $\epsilon>0$, a $(2+\epsilon)$-approximation in $\tilde{O}(sk+\sqrt{\min(st,n)})$…
Binary phylogenetic trees inferred from biological data are central to understanding the shared history among evolutionary units. However, inferring the placement of latent nodes in a tree is computationally expensive. State-of-the-art…
We provide faster randomized algorithms for computing an $\epsilon$-optimal policy in a discounted Markov decision process with $A_{\text{tot}}$-state-action pairs, bounded rewards, and discount factor $\gamma$. We provide an…
Fixed tree topologies are widely used in phylodynamic analyses to reduce computational burden, yet the consequences of this assumption remain insufficiently understood. Here, we systematically assess the impact of various fixed-topology…
The Lopsided Lov\'{a}sz Local Lemma (LLLL) is a powerful probabilistic principle which has been used in a variety of combinatorial constructions. While originally a general statement about probability spaces, it has recently been…
This paper proposes a distributed pseudo-likelihood method (DPL) to conveniently identify the community structure of large-scale networks. Specifically, we first propose a block-wise splitting method to divide large-scale network data into…
We introduce a new approach to LZ77 factorization that uses O(n/d) words of working space and O(dn) time for any d >= 1 (for polylogarithmic alphabet sizes). We also describe carefully engineered implementations of alternative approaches to…
Motivated by genome-wide association studies, we consider a standard linear model with one additional random effect in situations where many predictors have been collected on the same subjects and each predictor is analyzed separately.…
We tackle the problems of computing the rightmost variant of the Lempel-Ziv factorizations in the online/sliding model. Previous best bounds for this problem are O(n log n) time with O(n) space, due to Amir et al. [IPL 2002] for the online…
We study the problem of computing the maximum likelihood estimator (MLE) of multivariate log-concave densities. Our main result is the first computationally efficient algorithm for this problem. In more detail, we give an algorithm that, on…
In the Priority Steiner Tree (PST) problem, we are given an undirected graph $G=(V,E)$ with a source $s \in V$ and terminals $T \subseteq V \setminus \{s\}$, where each terminal $v \in T$ requires a nonnegative priority $P(v)$. The goal is…
Until recently, the fastest distributed MIS algorithm, even for simple graphs, e.g., unoriented trees has been the simple randomized algorithm discovered the 80s. This algorithm (commonly called Luby's algorithm) computes an MIS in $O(\log…
Tree edit distance is a well-studied measure of dissimilarity between rooted trees with node labels. It can be computed in $O(n^3)$ time [Demaine, Mozes, Rossman, and Weimann, ICALP 2007], and fine-grained hardness results suggest that the…
The generation speed of LLMs are bottlenecked by autoregressive decoding, where tokens are predicted sequentially one by one. Alternatively, diffusion large language models (dLLMs) theoretically allow for parallel token generation, but in…
Given the high computational complexity of decision tree estimation, classical methods construct a tree by adding one node at a time in a recursive way. To facilitate promoting fairness, we propose a fairness criterion local to the tree…