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Graphs neural networks (GNNs) learn node features by aggregating and combining neighbor information, which have achieved promising performance on many graph tasks. However, GNNs are mostly treated as black-boxes and lack human intelligible…

Machine Learning · Computer Science 2020-06-05 Hao Yuan , Jiliang Tang , Xia Hu , Shuiwang Ji

Node representation learning, such as Graph Neural Networks (GNNs), has emerged as a pivotal method in machine learning. The demand for reliable explanation generation surges, yet unsupervised models remain underexplored. To bridge this…

Machine Learning · Computer Science 2026-05-19 Hyunju Kang , Geonhee Han , Hogun Park

Deep learning models are widely used in traffic forecasting and have achieved state-of-the-art prediction accuracy. However, the black-box nature of those models makes the results difficult to interpret by users. This study aims to leverage…

Machine Learning · Computer Science 2025-12-16 Rushan Wang , Yanan Xin , Yatao Zhang , Fernando Perez-Cruz , Martin Raubal

Deep generative models can emulate the perceptual properties of complex image datasets, providing a latent representation of the data. However, manipulating such representation to perform meaningful and controllable transformations in the…

Machine Learning · Computer Science 2019-12-13 Michel Besserve , Arash Mehrjou , Rémy Sun , Bernhard Schölkopf

Neural networks are prone to learning shortcuts -- they often model simple correlations, ignoring more complex ones that potentially generalize better. Prior works on image classification show that instead of learning a connection to object…

Machine Learning · Computer Science 2021-01-18 Axel Sauer , Andreas Geiger

Deep Learning has become a very valuable tool in different fields, and no one doubts the learning capacity of these models. Nevertheless, since Deep Learning models are often seen as black boxes due to their lack of interpretability, there…

Machine Learning · Computer Science 2021-04-23 Jokin Labaien , Ekhi Zugasti , Xabier De Carlos

Admittedly, Graph Convolution Network (GCN) has achieved excellent results on graph datasets such as social networks, citation networks, etc. However, softmax used as the decision layer in these frameworks is generally optimized with…

Machine Learning · Computer Science 2022-07-19 Xuelong Li , Ziheng Jiao , Hongyuan Zhang , Rui Zhang

Counterfactual explanations (CFXs) provide human-understandable justifications for model predictions, enabling actionable recourse and enhancing interpretability. To be reliable, CFXs must avoid regions of high predictive uncertainty, where…

Machine Learning · Computer Science 2025-10-24 Aman Bilkhoo , Mehran Hosseini , Milad Kazemi , Nicola Paoletti

Graph Neural Networks (GNNs) achieve outstanding performance across graph-based tasks but remain difficult to interpret. In this paper, we revisit foundational assumptions underlying model-level explanation methods for GNNs, namely: (1)…

Machine Learning · Computer Science 2025-06-10 Hsiao-Ying Lu , Yiran Li , Ujwal Pratap Krishna Kaluvakolanu Thyagarajan , Kwan-Liu Ma

With the rapid deployment of graph neural networks (GNNs) based techniques into a wide range of applications such as link prediction, node classification, and graph classification the explainability of GNNs has become an indispensable…

Machine Learning · Computer Science 2023-01-03 Yiqiao Li , Jianlong Zhou , Boyuan Zheng , Fang Chen

This paper studies faithful explanations for Graph Neural Networks (GNNs). First, we provide a new and general method for formally characterizing the faithfulness of explanations for GNNs. It applies to existing explanation methods,…

Machine Learning · Computer Science 2022-05-25 Zifan Wang , Yuhang Yao , Chaoran Zhang , Han Zhang , Youjie Kang , Carlee Joe-Wong , Matt Fredrikson , Anupam Datta

Machine learning methods on graphs have proven useful in many applications due to their ability to handle generally structured data. The framework of Gaussian Markov Random Fields (GMRFs) provides a principled way to define Gaussian models…

Machine Learning · Statistics 2022-06-13 Joel Oskarsson , Per Sidén , Fredrik Lindsten

Vulnerability detection is crucial for ensuring the security and reliability of software systems. Recently, Graph Neural Networks (GNNs) have emerged as a prominent code embedding approach for vulnerability detection, owing to their ability…

Software Engineering · Computer Science 2024-07-16 Zhaoyang Chu , Yao Wan , Qian Li , Yang Wu , Hongyu Zhang , Yulei Sui , Guandong Xu , Hai Jin

Self-explaining models are models that reveal decision making parameters in an interpretable manner so that the model reasoning process can be directly understood by human beings. General Linear Models (GLMs) are self-explaining because the…

Machine Learning · Computer Science 2019-05-31 Yingjing Lu , Runde Yang

We propose $\textbf{MGCL}$, a model-driven graph contrastive learning (GCL) framework that leverages graphons (probabilistic generative models for graphs) to guide contrastive learning by accounting for the data's underlying generative…

Machine Learning · Computer Science 2025-06-09 Ali Azizpour , Nicolas Zilberstein , Santiago Segarra

Provenance graph-based intrusion detection systems are deployed on hosts to defend against increasingly severe Advanced Persistent Threat. Using Graph Neural Networks to detect these threats has become a research focus and has demonstrated…

Cryptography and Security · Computer Science 2025-08-11 Weiheng Wu , Wei Qiao , Teng Li , Yebo Feng , Zhuo Ma , Jianfeng Ma , Yang Liu

Graphs are fundamental data structures which concisely capture the relational structure in many important real-world domains, such as knowledge graphs, physical and social interactions, language, and chemistry. Here we introduce a powerful…

Machine Learning · Computer Science 2018-03-12 Yujia Li , Oriol Vinyals , Chris Dyer , Razvan Pascanu , Peter Battaglia

Graph Neural Networks (GNNs) have shown satisfying performance in various graph analytical problems. Hence, they have become the \emph{de facto} solution in a variety of decision-making scenarios. However, GNNs could yield biased results…

Machine Learning · Computer Science 2022-06-27 Yushun Dong , Song Wang , Yu Wang , Tyler Derr , Jundong Li

Graph diffusion models have gained significant attention in graph generation tasks, but they often inherit and amplify topology biases from sensitive attributes (e.g. gender, age, region), leading to unfair synthetic graphs. Existing fair…

Machine Learning · Computer Science 2026-03-03 Wendi Wang , Jiaxi Yang , Yongkang Du , Lu Lin

Machine Learning (ML) systems are a building part of the modern tools which impact our daily life in several application domains. Due to their black-box nature, those systems are hardly adopted in application domains (e.g. health, finance)…

Machine Learning · Computer Science 2022-10-24 Mario Alfonso Prado-Romero , Giovanni Stilo