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The goal of this paper is to interactively refine the automatic segmentation on challenging structures that fall behind human performance, either due to the scarcity of available annotations or the difficulty nature of the problem itself,…

Computer Vision and Pattern Recognition · Computer Science 2022-10-28 Wentao Liu , Chaofan Ma , Yuhuan Yang , Weidi Xie , Ya Zhang

Although existing medical image segmentation methods provide impressive pixel-wise accuracy, they often neglect topological correctness, making their segmentations unusable for many downstream tasks. One option is to retrain such models…

Image and Video Processing · Electrical Eng. & Systems 2024-09-17 Liu Li , Hanchun Wang , Matthew Baugh , Qiang Ma , Weitong Zhang , Cheng Ouyang , Daniel Rueckert , Bernhard Kainz

Curvilinear structure segmentation is important in medical imaging, quantifying structures such as vessels, airways, neurons, or organ boundaries in 2D slices. Segmentation via pixel-wise classification often fails to capture the small and…

Image and Video Processing · Electrical Eng. & Systems 2023-03-07 Manxi Lin , Zahra Bashir , Martin Grønnebæk Tolsgaard , Anders Nymark Christensen , Aasa Feragen

In medical imaging, accurate image segmentation is crucial for quantifying diseases, assessing prognosis, and evaluating treatment outcomes. However, existing methods lack an in-depth integration of global and local features, failing to pay…

Image and Video Processing · Electrical Eng. & Systems 2024-04-15 Yizhi Pan , Junyi Xin , Tianhua Yang , Teeradaj Racharak , Le-Minh Nguyen , Guanqun Sun

Segmenting medical images is critical to facilitating both patient diagnoses and quantitative research. A major limiting factor is the lack of labeled data, as obtaining expert annotations for each new set of imaging data and task can be…

Computer Vision and Pattern Recognition · Computer Science 2024-06-27 Chen Liu , Matthew Amodio , Liangbo L. Shen , Feng Gao , Arman Avesta , Sanjay Aneja , Jay C. Wang , Lucian V. Del Priore , Smita Krishnaswamy

Object recognition in unseen indoor environments remains a challenging problem for visual perception of mobile robots. In this letter, we propose the use of topologically persistent features, which rely on the objects' shape information, to…

Computer Vision and Pattern Recognition · Computer Science 2021-07-30 Ekta U. Samani , Xingjian Yang , Ashis G. Banerjee

Variational models are widely used in image segmentation, with various models designed to address different types of images by optimizing specific objective functionals. However, traditional segmentation models primarily focus on the visual…

Computer Vision and Pattern Recognition · Computer Science 2025-03-25 Lingyun Deng , Litong Liu , Dong Wang , Xiao-Ping Wang

Ambiguous Medical Image Segmentation (AMIS) is significant to address the challenges of inherent uncertainties from image ambiguities, noise, and subjective annotations. Existing conditional variational autoencoder (cVAE)-based methods…

Computer Vision and Pattern Recognition · Computer Science 2026-03-16 Xiangyu Li , Chenglin Wang , Qiantong Shen , Fanding Li , Wei Wang , Kuanquan Wang , Yi Shen , Baochun Zhao , Gongning Luo

In medical image segmentation tasks, diffusion models have shown significant potential. However, mainstream diffusion models suffer from drawbacks such as multiple sampling times and slow prediction results. Recently, consistency models, as…

Computer Vision and Pattern Recognition · Computer Science 2024-05-16 Kejia Zhang , Lan Zhang , Haiwei Pan , Baolong Yu

Medical Image Segmentation (MIS) stands as a cornerstone in medical image analysis, playing a pivotal role in precise diagnostics, treatment planning, and monitoring of various medical conditions. This paper presents a comprehensive and…

Computer Vision and Pattern Recognition · Computer Science 2025-10-08 Ahmed Kabil , Ghada Khoriba , Mina Yousef , Essam A. Rashed

Topological consistency plays a crucial role in the task of boundary segmentation for reticular images, such as cell membrane segmentation in neuron electron microscopic images, grain boundary segmentation in material microscopic images and…

Computer Vision and Pattern Recognition · Computer Science 2026-05-27 Chuni Liu , Boyuan Ma , Xiaojuan Ban , Yujie Xie , Hao Wang , Weihua Xue , Jingchao Ma , Ke Xu

Topological accuracy in medical image segmentation is a highly important property for downstream applications such as network analysis and flow modeling in vessels or cell counting. Recently, significant methodological advancements have…

Image and Video Processing · Electrical Eng. & Systems 2024-10-10 Alexander H. Berger , Nico Stucki , Laurin Lux , Vincent Buergin , Suprosanna Shit , Anna Banaszak , Daniel Rueckert , Ulrich Bauer , Johannes C. Paetzold

Accurate segmentation of tubular structures in medical images, such as vessels and airway trees, is crucial for computer-aided diagnosis, radiotherapy, and surgical planning. However, significant challenges exist in algorithm design when…

Image and Video Processing · Electrical Eng. & Systems 2025-04-11 Yi Huang , Ke Zhang , Wei Liu , Yuanyuan Wang , Vishal M. Patel , Le Lu , Xu Han , Dakai Jin , Ke Yan

In clinical practice, regions of interest in medical imaging often need to be identified through a process of precise image segmentation. The quality of this image segmentation step critically affects the subsequent clinical assessment of…

Image and Video Processing · Electrical Eng. & Systems 2021-03-23 João B. S. Carvalho , João A. Santinha , Đorđe Miladinović , Joachim M. Buhmann

Image segmentation is a primary task in many medical applications. Recently, many deep networks derived from U-Net have been extensively used in various medical image segmentation tasks. However, in most of the cases, networks similar to…

Computer Vision and Pattern Recognition · Computer Science 2019-08-15 Balamurali Murugesan , Kaushik Sarveswaran , Sharath M Shankaranarayana , Keerthi Ram , Mohanasankar Sivaprakasam

Techniques from computational topology, in particular persistent homology, are becoming increasingly relevant for data analysis. Their stable metrics permit the use of many distance-based data analysis methods, such as multidimensional…

Algebraic Topology · Mathematics 2021-01-20 Bastian Rieck , Filip Sadlo , Heike Leitte

The accurate segmentation of medical images is a crucial step in obtaining reliable morphological statistics. However, training a deep neural network for this task requires a large amount of labeled data to ensure high-accuracy results. To…

Image and Video Processing · Electrical Eng. & Systems 2023-07-04 Xianjun Han , Qianqian Chen , Zhaoyang Xie , Xuejun Li , Hongyu Yang

Medical image segmentation plays a crucial role in various clinical applications. A major challenge in medical image segmentation is achieving accurate delineation of regions of interest in the presence of noise, low contrast, or complex…

Image and Video Processing · Electrical Eng. & Systems 2025-02-20 Yucheng Zeng

With respect to spatial overlap, CNN-based segmentation of short axis cardiovascular magnetic resonance (CMR) images has achieved a level of performance consistent with inter observer variation. However, conventional training procedures…

Image and Video Processing · Electrical Eng. & Systems 2020-08-24 Nick Byrne , James R. Clough , Giovanni Montana , Andrew P. King

Multi-class segmentation of cardiac magnetic resonance (CMR) images seeks a separation of data into anatomical components with known structure and configuration. The most popular CNN-based methods are optimised using pixel wise loss…

Image and Video Processing · Electrical Eng. & Systems 2022-09-09 Nick Byrne , James R Clough , Isra Valverde , Giovanni Montana , Andrew P King