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K-means is undoubtedly the most widely used partitional clustering algorithm. Unfortunately, due to its gradient descent nature, this algorithm is highly sensitive to the initial placement of the cluster centers. Numerous initialization…

Machine Learning · Computer Science 2012-09-11 M. Emre Celebi , Hassan A. Kingravi , Patricio A. Vela

In generating large quantities of DNA data, high-throughput sequencing technologies require advanced bioinformatics infrastructures for efficient data analysis. k-mer counting, the process of quantifying the frequency of fixed-length k DNA…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-11 Yifan Li , Giulia Guidi

We present methods for k-means clustering on a stream with a focus on providing fast responses to clustering queries. Compared to the current state-of-the-art, our methods provide substantial improvement in the query time for cluster…

Data Structures and Algorithms · Computer Science 2018-12-10 Yu Zhang , Kanat Tangwongsan , Srikanta Tirthapura

Spherical k-Means is frequently used to cluster document collections because it performs reasonably well in many settings and is computationally efficient. However, the time complexity increases linearly with the number of clusters k, which…

Machine Learning · Computer Science 2021-08-03 Johannes Knittel , Steffen Koch , Thomas Ertl

Kernel methods are fundamental tools in machine learning that allow detection of non-linear dependencies between data without explicitly constructing feature vectors in high dimensional spaces. A major disadvantage of kernel methods is…

Data Structures and Algorithms · Computer Science 2020-12-23 Thomas D. Ahle , Michael Kapralov , Jakob B. T. Knudsen , Rasmus Pagh , Ameya Velingker , David Woodruff , Amir Zandieh

Recent years have witnessed an increasing popularity of algorithm design for distributed data, largely due to the fact that massive datasets are often collected and stored in different locations. In the distributed setting communication…

Data Structures and Algorithms · Computer Science 2017-06-06 Sudipto Guha , Yi Li , Qin Zhang

This paper describes a new asynchronous algorithm and implementation for the problem of k-mer counting (KC), which concerns quantifying the frequency of length k substrings in a DNA sequence. This operation is common to many computational…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-05-08 Souvadra Hati , Akihiro Hayashi , Richard Vuduc

Large deep learning models have demonstrated strong ability to solve many tasks across a wide range of applications. Those large models typically require training and inference to be distributed. Tensor parallelism is a common technique…

This paper formulates a distributed computation problem, where a master asks $N$ distributed workers to compute a linearly separable function. The task function can be expressed as $K_c$ linear combinations of $K$ messages, where each…

Information Theory · Computer Science 2021-10-26 Kai Wan , Hua Sun , Mingyue Ji , Giuseppe Caire

We consider the $k$-means clustering problem in the dynamic streaming setting, where points from a discrete Euclidean space $\{1, 2, \ldots, \Delta\}^d$ can be dynamically inserted to or deleted from the dataset. For this problem, we…

Data Structures and Algorithms · Computer Science 2019-02-08 Wei Hu , Zhao Song , Lin F. Yang , Peilin Zhong

K-means clustering, as a classic unsupervised machine learning algorithm, is the key step to select the interpolation sampling points in interpolative separable density fitting (ISDF) decomposition. Real-valued K-means clustering for…

Computational Physics · Physics 2024-01-09 Shizhe Jiao , Jielan Li , Xinming Qin , Lingyun Wan , Wei Hu , Jinlong Yang

Learning augmented is a machine learning concept built to improve the performance of a method or model, such as enhancing its ability to predict and generalize data or features, or testing the reliability of the method by introducing noise…

Machine Learning · Computer Science 2024-01-09 Issam K. O Jabari , Shofiyah , Pradiptya Kahvi S , Novi Nur Putriwijaya , Novanto Yudistira

The popular K-means clustering algorithm potentially suffers from a major weakness for further analysis or interpretation. Some cluster may have disproportionately more (or fewer) points from one of the subpopulations in terms of some…

Machine Learning · Computer Science 2026-02-10 Guancheng Zhou , Haiping Xu , Hongkang Xu , Chenyu Li , Donghui Yan

A distributed algorithm performs local computations on pieces of input and communicates the results through given communication links. When processing a massive graph in a distributed algorithm, local outputs must be configured as a…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-12-06 Fan Chung , Olivia Simpson

Organizing data into semantically more meaningful is one of the fundamental modes of understanding and learning. Cluster analysis is a formal study of methods for understanding and algorithm for learning. K-mean clustering algorithm is one…

Machine Learning · Computer Science 2013-01-03 Doreswamy , K. S. Hemanth

Clustering, a fundamental activity in unsupervised learning, is notoriously difficult when the feature space is high-dimensional. Fortunately, in many realistic scenarios, only a handful of features are relevant in distinguishing clusters.…

Machine Learning · Statistics 2020-10-23 Zhiyue Zhang , Kenneth Lange , Jason Xu

Clustering plays a crucial role in computer science, facilitating data analysis and problem-solving across numerous fields. By partitioning large datasets into meaningful groups, clustering reveals hidden structures and relationships within…

Databases · Computer Science 2026-02-19 Aryan Esmailpour , Stavros Sintos

K-Means algorithm is a popular clustering method. However, it has two limitations: 1) it gets stuck easily in spurious local minima, and 2) the number of clusters k has to be given a priori. To solve these two issues, a multi-prototypes…

Machine Learning · Computer Science 2023-02-15 Dong Li , Shuisheng Zhou , Tieyong Zeng , Raymond H. Chan

Knowledge discovery is one of the main goals of Artificial Intelligence. This Knowledge is usually stored in databases spread in different environments, being a tedious (or impossible) task to access and extract data from them. To this…

Machine Learning · Computer Science 2020-09-23 Daniel Hurtado Ramírez , J. M. Auñón

Centroid based clustering methods such as k-means, k-medoids and k-centers are heavily applied as a go-to tool in exploratory data analysis. In many cases, those methods are used to obtain representative centroids of the data manifold for…

Machine Learning · Computer Science 2022-06-16 Ahmed Imtiaz Humayun , Randall Balestriero , Anastasios Kyrillidis , Richard Baraniuk