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Understanding historical trends in the epidemic of HIV is important for assessing current and projecting future trends in prevalence, incidence and mortality and for evaluating the impact and cost-effectiveness of control measures. In…

Quantitative Methods · Quantitative Biology 2014-12-10 Brian G. Williams

Identifying areas in a landscape where individuals have a higher likelihood of disease infection is key to managing diseases. Unlike conventional methods relying on ecological assumptions, we perform a novel epidemiological tomography for…

Knowledge graph embedding (KGE) is a technique for learning continuous embeddings for entities and relations in the knowledge graph.Due to its benefit to a variety of downstream tasks such as knowledge graph completion, question answering…

Machine Learning · Computer Science 2019-06-25 Hengtong Zhang , Tianhang Zheng , Jing Gao , Chenglin Miao , Lu Su , Yaliang Li , Kui Ren

Men who have sex with men (MSM) remain disproportionately affected by HIV, yet optimizing Pre-exposure Prophylaxis (PrEP) distribution remains a public health challenge. Current guidelines and most modelling studies do not incorporate…

Physics and Society · Physics 2026-03-17 João Brázia , István Z. Kiss , Alexandre P. Francisco , Andreia Sofia Teixeira

With the rapid development of the World Wide Web (WWW), heterogeneous graphs (HG) have explosive growth. Recently, heterogeneous graph neural network (HGNN) has shown great potential in learning on HG. Current studies of HGNN mainly focus…

Social and Information Networks · Computer Science 2023-02-27 Jiayan Guo , Lun Du , Wendong Bi , Qiang Fu , Xiaojun Ma , Xu Chen , Shi Han , Dongmei Zhang , Yan Zhang

Treating and preventing Human Immunodeficiency Virus (HIV) remains a critical global health challenge. While antiretroviral therapy provides a path toward viral suppression -- effectively eliminating an individual's transmission risk --…

Physics and Society · Physics 2026-05-21 Akseli Kangaslahti , Davin Choo , Milind Tambe , Alastair van Heerden , Cheryl Johnson

Most networks tend to show complex and multiple relationships between entities. Networks are usually modeled by graphs or hypergraphs; nonetheless a given entity can occur many times in a relationship: this brings the need to deal with…

Data Structures and Algorithms · Computer Science 2019-05-30 Xavier Ouvrard , Jean-Marie Le Goff , Stephane Marchand-Maillet

Given a network represented by a graph $G=(V,E)$, we consider a dynamical process of influence diffusion in $G$ that evolves as follows: Initially only the nodes of a given $S\subseteq V$ are influenced; subsequently, at each round, the set…

Data Structures and Algorithms · Computer Science 2016-10-13 Gennaro Cordasco , Luisa Gargano , Marco Mecchia , Adele A. Rescigno , Ugo Vaccaro

As estimation of Heterogeneous Treatment Effect (HTE) is increasingly adopted across a wide range of scientific and industrial applications, the treatment action space can naturally expand, from a binary treatment variable to a structured…

Machine Learning · Computer Science 2025-07-09 Jennifer Y. Zhang , Shuyang Du , Will Y. Zou

Pathogen deep-sequencing is an increasingly routinely used technology in infectious disease surveillance. We present a semi-parametric Bayesian Poisson model to exploit these emerging data for inferring infectious disease transmission flows…

Applications · Statistics 2022-01-06 Xiaoyue Xi , Simon EF Spencer , Matthew Hall , M Kate Grabowski , Joseph Kagaayi , Oliver Ratmann

We introduce a new version of forward stepwise regression. Our modification finds solutions to regression problems where the selected predictors appear in a structured pattern, with respect to a predefined distance measure over the…

Methodology · Statistics 2011-08-02 Daniel Percival , Kathryn Roeder , Roni Rosenfeld , Larry Wasserman

With growing deployment of Internet of Things (IoT) and machine learning (ML) applications, which need to leverage computation on edge and cloud resources, it is important to develop algorithms and tools to place these distributed…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-30 Xiangchen Zhao , Diyi Hu , Bhaskar Krishnamachari

Efficient testing and vaccination protocols are critical aspects of epidemic management. To study the optimal allocation of limited testing and vaccination resources in a heterogeneous contact network of interacting susceptible, recovered,…

Populations and Evolution · Quantitative Biology 2026-05-12 Mingtao Xia , Lucas Böttcher , Tom Chou

The performance of many network learning applications crucially hinges on the success of network embedding algorithms, which aim to encode rich network information into low-dimensional vertex-based vector representations. This paper…

Machine Learning · Computer Science 2019-10-01 Wenlin Wang , Chenyang Tao , Zhe Gan , Guoyin Wang , Liqun Chen , Xinyuan Zhang , Ruiyi Zhang , Qian Yang , Ricardo Henao , Lawrence Carin

Comorbidity carries significant implications for disease understanding and management. The genetic causes for comorbidity often trace back to mutations occurred either in the same gene associated with two diseases or in different genes…

Machine Learning · Computer Science 2025-03-07 Xihan Qin , Li Liao

We propose a deterministic compartmental model of infectious disease which considers the test-kits as an important ingredient for the suppression and mitigation of epidemics. A rigorous simulation (with analytical argument) is provided to…

Physics and Society · Physics 2021-07-28 Subrata Ghosh , Abhishek Senapati , Joydev Chattopadhyay , Chittaranjan Hens , Dibakar Ghosh

Network embedding is an effective way to solve the network analytics problems such as node classification, link prediction, etc. It represents network elements using low dimensional vectors such that the graph structural information and…

Social and Information Networks · Computer Science 2019-09-04 Yucheng Lin , Xiaoqing Yang , Zang Li , Jieping Ye

The outbreak of a pandemic, such as COVID-19, causes major health crises worldwide. Typical measures to contain the rapid spread usually include effective vaccination and strict interventions (Nature Human Behaviour, 2021). Motivated by…

Social and Information Networks · Computer Science 2025-03-31 Gargi Bakshi , Sujoy Bhore , Suraj Shetiya

Influence estimation aims to predict the total influence spread in social networks and has received surged attention in recent years. Most current studies focus on estimating the total number of influenced users in a social network, and…

Social and Information Networks · Computer Science 2023-08-22 Yingdan Shi , Jingya Zhou , Congcong Zhang

Recent years have witnessed tremendous interest in understanding and predicting information spread on social media platforms such as Twitter, Facebook, etc. Existing diffusion prediction methods primarily exploit the sequential order of…

Social and Information Networks · Computer Science 2020-06-09 Aravind Sankar , Xinyang Zhang , Adit Krishnan , Jiawei Han