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We study the stochastic shortest path (SSP) problem in reinforcement learning with linear function approximation, where the transition kernel is represented as a linear mixture of unknown models. We call this class of SSP problems as linear…
In computational genomics, many analyses rely on efficient storage and traversal of $k$-mers, motivating compact representations such as spectrum-preserving string sets (SPSS), which store strings whose $k$-mer spectrum matches that of the…
In the Manhattan Sequence Consensus problem (MSC problem) we are given $k$ integer sequences, each of length $l$, and we are to find an integer sequence $x$ of length $l$ (called a consensus sequence), such that the maximum Manhattan…
The minimum sum-of-squares clustering (MSSC), or k-means type clustering, is traditionally considered an unsupervised learning task. In recent years, the use of background knowledge to improve the cluster quality and promote…
Given a string $S$ of $n$ integers in $[0,\sigma)$, a range minimum query RMQ$(i, j)$ asks for the index of the smallest integer in $S[i \dots j]$. It is well known that the problem can be solved with a succinct data structure of size $2n +…
A critical problem in the emerging high-throughput genotyping protocols is to minimize the number of polymerase chain reaction (PCR) primers required to amplify the single nucleotide polymorphism loci of interest. In this paper we study PCR…
Longest common substring (LCS), longest palindrome substring (LPS), and Ulam distance (UL) are three fundamental string problems that can be classically solved in near linear time. In this work, we present sublinear time quantum algorithms…
Suppose an oracle knows a string $S$ that is unknown to us and that we want to determine. The oracle can answer queries of the form "Is $s$ a substring of $S$?". In 1995, Skiena and Sundaram showed that, in the worst case, any algorithm…
We provide algorithms for the minimum 2-edge-connected spanning subgraph problem and the minimum 2-vertex-connected spanning subgraph problem with approximation ratio both $\frac{4}{3}$. Using a common theme, the algorithms and their…
The minimum set cover (MSC) problem admits two classic algorithms: a greedy $\ln n$-approximation and a primal-dual $f$-approximation, where $n$ is the universe size and $f$ is the maximum frequency of an element. Both algorithms are simple…
Motivated by a wide range of applications in data mining and machine learning, we consider the problem of maximizing a submodular function subject to supermodular cost constraints. In contrast to the well-understood setting of cardinality…
We study the problem of reconstructing a sparse signal from a limited number of its linear projections when a part of its support is known, although the known part may contain some errors. The ``known" part of the support, denoted T, may be…
Compressed sensing (CS) is a powerful tool for reducing the amount of data to be collected while maintaining high spatial resolution. Such techniques work well in practice and at the same time are supported by solid theory. Standard CS…
The paper introduces the simultaneous partial-inverse problem (SPI) for polynomials and develops its application to decoding interleaved Reed--Solomon codes beyond half the minimum distance. While closely related both to standard key…
Recently, a novel coded compressed sensing (CCS) approach was proposed in [1] for dealing with the scalability problem for large sensing matrices in massive machine-type communications. The approach is to divide the compressed sensing (CS)…
The basic goal of survivable network design is to construct low-cost networks which preserve a sufficient level of connectivity despite the failure or removal of a few nodes or edges. One of the most basic problems in this area is the…
Interdiction problems ask about the worst-case impact of a limited change to an underlying optimization problem. They are a natural way to measure the robustness of a system, or to identify its weakest spots. Interdiction problems have been…
In the Minimum Consistent Subset (MCS) problem, we are presented with a connected simple undirected graph $G=(V,E)$, consisting of a vertex set $V$ of size $n$ and an edge set $E$. Each vertex in $V$ is assigned a color from the set…
This paper introduces a new family of reconstruction codes which is motivated by applications in DNA data storage and sequencing. In such applications, DNA strands are sequenced by reading some subset of their substrings. While previous…
We study sparsity in the max-plus algebraic setting. We seek both exact and approximate solutions of the max-plus linear equation with minimum cardinality of support. In the former case, the sparsest solution problem is shown to be…