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Current genomic foundation models (GFMs) rely on extensive neural computation to implicitly approximate conserved biological motifs from single-nucleotide inputs. We propose Gengram, a conditional memory module that introduces an explicit…

Retrieval-Augmented Generation (RAG) is widely used to inject external non-parametric knowledge into large language models (LLMs). Recent works suggest that Knowledge Graphs (KGs) contain valuable external knowledge for LLMs. Retrieving…

Computation and Language · Computer Science 2024-10-10 Wenyu Huang , Guancheng Zhou , Hongru Wang , Pavlos Vougiouklis , Mirella Lapata , Jeff Z. Pan

Retrieval Augmented Generation (RAG) has gradually emerged as a promising paradigm for enhancing the accuracy and factual consistency of content generated by large language models (LLMs). However, existing RAG studies primarily focus on…

Information Retrieval · Computer Science 2025-07-24 Qikai Wei , Huansheng Ning , Chunlong Han , Jianguo Ding

Retrieval-Augmented Generation (RAG) enhances Large Language Models (LLMs) by integrating them with an external knowledge base to improve the answer relevance and accuracy. In real-world scenarios, beyond pure text, a substantial amount of…

Computation and Language · Computer Science 2025-10-07 Jiaru Zou , Dongqi Fu , Sirui Chen , Xinrui He , Zihao Li , Yada Zhu , Jiawei Han , Jingrui He

The growing interests and applications of graph learning in diverse domains have propelled the development of a unified model generalizing well across different graphs and tasks, known as the Graph Foundation Model (GFM). Existing research…

Machine Learning · Computer Science 2025-06-17 Trung-Kien Nguyen , Heng Ping , Shixuan Li , Peiyu Zhang , Nikos Kanakaris , Nicholas Kotov , Paul Bogdan

Graph Retrieval Augmented Generation (GraphRAG) effectively enhances external knowledge integration capabilities by explicitly modeling knowledge relationships, thereby improving the factual accuracy and generation quality of Large Language…

Artificial Intelligence · Computer Science 2025-06-05 Junqi Gao , Xiang Zou , YIng Ai , Dong Li , Yichen Niu , Biqing Qi , Jianxing Liu

Deploying Large Language Model (LLM) applications, particularly those relying on Retrieval-Augmented Generation (RAG), remains challenging due to high computational demands, outdated knowledge bases, and the need to manually select optimal…

Retrieval-augmented generation (RAG) empowers large language models to access external and private corpus, enabling factually consistent responses in specific domains. By exploiting the inherent structure of the corpus, graph-based RAG…

Artificial Intelligence · Computer Science 2025-04-17 Tianyang Xu , Haojie Zheng , Chengze Li , Haoxiang Chen , Yixin Liu , Ruoxi Chen , Lichao Sun

Large Language Models (LLMs) are adept at generating responses based on information within their context. While this ability is useful for interacting with structured data like code files, another popular method, Retrieval-Augmented…

Computation and Language · Computer Science 2025-10-22 Mihir Gupte , Paolo Giusto , Ramesh S

Large Language Models (LLMs) integrated with Retrieval-Augmented Generation (RAG) techniques have exhibited remarkable performance across a wide range of domains. However, existing RAG approaches primarily operate on unstructured data and…

Artificial Intelligence · Computer Science 2026-04-22 Ge Chang , Jinbo Su , Jiacheng Liu , Pengfei Yang , Yuhao Shang , Huiwen Zheng , Hongli Ma , Yan Liang , Yuanchun Li , Yunxin Liu

Recent advancements in large language models (LLMs) and multi-modal LLMs have been remarkable. However, these models still rely solely on their parametric knowledge, which limits their ability to generate up-to-date information and…

Artificial Intelligence · Computer Science 2025-04-22 Zihan Ling , Zhiyao Guo , Yixuan Huang , Yi An , Shuai Xiao , Jinsong Lan , Xiaoyong Zhu , Bo Zheng

Retrieval-augmented generation (RAG) has emerged as a promising technology for addressing hallucination issues in the responses generated by large language models (LLMs). Existing studies on RAG primarily focus on applying semantic-based…

Computation and Language · Computer Science 2025-02-12 Xiangrong Zhu , Yuexiang Xie , Yi Liu , Yaliang Li , Wei Hu

Knowledge-graph retrieval-augmented generation (KG-RAG) couples large language models (LLMs) with structured, verifiable knowledge graphs (KGs) to reduce hallucination and provide reasoning traces. However, current KG-RAG systems often rely…

Computation and Language · Computer Science 2026-05-25 Junhong Lin , Shicheng Liu , Jinyeop Song , Song Wang , Julian Shun , Yada Zhu

While Graph Neural Networks (GNNs) recently became powerful tools in graph learning tasks, considerable efforts have been spent on improving GNNs' structural encoding ability. A particular line of work proposed subgraph GNNs that use…

Machine Learning · Computer Science 2023-10-31 Lecheng Kong , Jiarui Feng , Hao Liu , Dacheng Tao , Yixin Chen , Muhan Zhang

Relational databases store much of the world's structured information, and they are essential for driving complex predictive applications. However, deep learning progress on relational data remains limited, as conventional approaches…

Large Language Models (LLMs) have enabled a wide range of applications through their powerful capabilities in language understanding and generation. However, as LLMs are trained on static corpora, they face difficulties in addressing…

Computation and Language · Computer Science 2025-10-13 Yongjie Wang , Yue Yu , Kaisong Song , Jun Lin , Zhiqi Shen

Retrieval-augmented generation (RAG) systems have been widely adopted in contemporary large language models (LLMs) due to their ability to improve generation quality while reducing the required input context length. In this work, we focus…

Computation and Language · Computer Science 2026-04-07 Tianyi Zhang , Andreas Marfurt

Text-Attributed Graphs (TAGs), where each node is associated with text descriptions, are ubiquitous in real-world scenarios. They typically exhibit distinctive structure and domain-specific knowledge, motivating the development of a Graph…

Machine Learning · Computer Science 2025-10-21 Xi Zhu , Haochen Xue , Ziwei Zhao , Wujiang Xu , Jingyuan Huang , Minghao Guo , Qifan Wang , Kaixiong Zhou , Imran Razzak , Yongfeng Zhang

Recent advances in large language models (LLMs) have led to impressive progress in natural language generation, yet their tendency to produce hallucinated or unsubstantiated content remains a critical concern. To improve factual…

Computation and Language · Computer Science 2025-05-20 Xukai Liu , Ye Liu , Shiwen Wu , Yanghai Zhang , Yihao Yuan , Kai Zhang , Qi Liu

Message passing is a core mechanism in Graph Neural Networks (GNNs), enabling the iterative update of node embeddings by aggregating information from neighboring nodes. Graph Convolutional Networks (GCNs) exemplify this approach by adapting…

Machine Learning · Computer Science 2026-03-26 Mayssa Soussia , Gita Ayu Salsabila , Mohamed Ali Mahjoub , Islem Rekik