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Motivated by the challenging segmentation task of pancreatic tubular networks, this paper tackles two commonly encountered problems in biomedical imaging: Topological consistency of the segmentation, and expensive or difficult annotation.…

Computer Vision and Pattern Recognition · Computer Science 2023-06-29 Kasra Arnavaz , Oswin Krause , Kilian Zepf , Jelena M. Krivokapic , Silja Heilmann , Jakob Andreas Bærentzen , Pia Nyeng , Aasa Feragen

Detecting and segmenting dysfluencies is crucial for effective speech therapy and real-time feedback. However, most methods only classify dysfluencies at the utterance level. We introduce StutterCut, a semi-supervised framework that…

Sound · Computer Science 2025-08-05 Suhita Ghosh , Melanie Jouaiti , Jan-Ole Perschewski , Sebastian Stober

Tractography parcellation classifies streamlines reconstructed from diffusion MRI into anatomically defined fiber tracts for clinical and research applications. However, clinical scans often have incomplete fields of view (FOV) where brain…

Computer Vision and Pattern Recognition · Computer Science 2025-03-07 Yuqian Chen , Leo Zekelman , Yui Lo , Suheyla Cetin-Karayumak , Tengfei Xue , Yogesh Rathi , Nikos Makris , Fan Zhang , Weidong Cai , Lauren J. O'Donnell

Sampling useful three-dimensional molecular structures along with their most favorable conformations is a key challenge in drug discovery. Current state-of-the-art 3D de-novo design flow matching or diffusion-based models are limited to…

Machine Learning · Computer Science 2025-11-24 Riccardo Tedoldi , Ola Engkvist , Patrick Bryant , Hossein Azizpour , Jon Paul Janet , Alessandro Tibo

By reducing resolution, coarse-grained models greatly accelerate molecular simulations, unlocking access to long-timescale phenomena, though at the expense of microscopic information. Recovering this fine-grained detail is essential for…

Chemical Physics · Physics 2026-03-27 Sander Hummerich , Tristan Bereau , Ullrich Köthe

Airway segmentation is crucial for the examination, diagnosis, and prognosis of lung diseases, while its manual delineation is unduly burdensome. To alleviate this time-consuming and potentially subjective manual procedure, researchers have…

Image and Video Processing · Electrical Eng. & Systems 2022-09-12 Yang Nan , Javier Del Ser , Zeyu Tang , Peng Tang , Xiaodan Xing , Yingying Fang , Francisco Herrera , Witold Pedrycz , Simon Walsh , Guang Yang

A well-known drawback of the Volume-Of-Fluid (VOF) method is that the breakup of thin liquid films or filaments is mainly caused by numerical aspects rather than by physical ones. The rupture of thin films occurs when their thickness…

Fluid Dynamics · Physics 2022-07-25 Leonardo Chirco , Jacob Maarek , Stephane Popinet , Stephane Zaleski

The design of protein sequences with desired functionalities is a fundamental task in protein engineering. Deep generative methods, such as autoregressive models and diffusion models, have greatly accelerated the discovery of novel protein…

Machine Learning · Computer Science 2025-04-16 Zitai Kong , Yiheng Zhu , Yinlong Xu , Hanjing Zhou , Mingzhe Yin , Jialu Wu , Hongxia Xu , Chang-Yu Hsieh , Tingjun Hou , Jian Wu

Video-assisted transoral tracheal intubation (TI) necessitates using an endoscope that helps the physician insert a tracheal tube into the glottis instead of the esophagus. The growing trend of robotic-assisted TI would require a medical…

Artificial Intelligence · Computer Science 2023-07-31 Guankun Wang , Tian-Ao Ren , Jiewen Lai , Long Bai , Hongliang Ren

This paper describes an investigation into part of the mechanical mechanisms underlying the formation of mitotic spindle, the cellular machinery responsible for chromosomal separation during cell division. In normal eukaryotic cells,…

Subcellular Processes · Quantitative Biology 2019-05-29 Samira Masoudi , Cameron H. G. Wright , Jesse C. Gatlin , John. S. Oakey

Semantic segmentation is crucial for medical image analysis, enabling precise disease diagnosis and treatment planning. However, many advanced models employ complex architectures, limiting their use in resource-constrained clinical…

Image and Video Processing · Electrical Eng. & Systems 2026-01-06 Le-Anh Tran , Chung Nguyen Tran , Nhan Cach Dang , Anh Le Van Quoc , Jordi Carrabina , David Castells-Rufas , Minh Son Nguyen

Traditional discriminative computer vision relies predominantly on static projections, mapping input features to outputs in a single computational step. Although efficient, this paradigm lacks the iterative refinement and robustness…

Computer Vision and Pattern Recognition · Computer Science 2026-03-17 Om Govind Jha , Manoj Bamniya , Ayon Borthakur

Generating high-quality time series data has emerged as a critical research topic due to its broad utility in supporting downstream time series mining tasks. A major challenge lies in modeling the intrinsic stochasticity of temporal…

Artificial Intelligence · Computer Science 2025-11-20 He Panjing , Cheng Mingyue , Li Li , Zhang XiaoHan

Accurate perception of dynamic traffic scenes is crucial for high-level autonomous driving systems, requiring robust object motion estimation and instance segmentation. However, traditional methods often treat them as separate tasks,…

Computer Vision and Pattern Recognition · Computer Science 2025-03-20 Yinqi Chen , Meiying Zhang , Qi Hao , Guang Zhou

This paper introduces a novel approach that combines unsupervised active contour models with deep learning for robust and adaptive image segmentation. Indeed, traditional active contours, provide a flexible framework for contour evolution…

Computer Vision and Pattern Recognition · Computer Science 2024-07-16 Antoine Habis , Vannary Meas-Yedid , Elsa Angelini , Jean-Christophe Olivo-Marin

Cell instance segmentation in fluorescence microscopy images is becoming essential for cancer dynamics and prognosis. Data extracted from cancer dynamics allows to understand and accurately model different metabolic processes such as…

Medical image segmentation is essential for clinical applications such as disease diagnosis, treatment planning, and disease development monitoring because it provides precise morphological and spatial information on anatomical structures…

Computer Vision and Pattern Recognition · Computer Science 2026-05-01 Moin Safdar , Shahzaib Iqbal , Mubeen Ghafoor , Tariq M. Khan , Imran Razzak , Thantrira Porntaveetus , Hamid Alinejad-Rokny

Accurate segmentation of brain images from magnetic resonance imaging (MRI) scans plays a pivotal role in brain image analysis and the diagnosis of neurological disorders. Deep learning algorithms, particularly U-Net and U-Net++, are widely…

Image and Video Processing · Electrical Eng. & Systems 2026-03-20 Hanuman Verma , Kiho Im , Akshansh Gupta , M. Tanveer

Flow cytometry mainly used for detecting the characteristics of a number of biochemical substances based on the expression of specific markers in cells. It is particularly useful for detecting membrane surface receptors, antigens, ions, or…

Machine Learning · Computer Science 2023-03-17 Yanhua Xu

In digital pathology, whole-slide images routinely exceed gigapixel resolution, making computationally intensive generative super-resolution (SR) impractical for routine deployment. We introduce CAFlow, an adaptive-depth single-step…

Computer Vision and Pattern Recognition · Computer Science 2026-03-20 Elad Yoshai , Ariel D. Yoshai , Natan T. Shaked