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Connectomics has emerged as a powerful tool in neuroimaging and has spurred recent advancements in statistical and machine learning methods for connectivity data. Despite connectomes inhabiting a matrix manifold, most analytical frameworks…

Quantitative Methods · Quantitative Biology 2023-03-28 Niharika S. D'Souza , Archana Venkataraman

Neuroimaging provides essential tools for characterizing brain activity by quantifying connectivity strength between remote regions, using different modalities that capture different aspects of connectivity. Yet, decoding meaningful neural…

Machine Learning · Computer Science 2026-01-08 Ce Ju , Reinmar Kobler , Antoine Collas , Motoaki Kawanabe , Cuntai Guan , Bertrand Thirion

Graph Neural Networks (GNNs) have demonstrated impressive capabilities in modeling graph-structured data, while Spiking Neural Networks (SNNs) offer high energy efficiency through sparse, event-driven computation. However, existing spiking…

Neural and Evolutionary Computing · Computer Science 2025-08-26 Bowen Zhang , Genan Dai , Hu Huang , Long Lan

State-space models (SSMs) offer a powerful framework for dynamical system analysis, wherein the temporal dynamics of the system are assumed to be captured through the evolution of the latent states, which govern the values of the…

Machine Learning · Statistics 2024-12-17 Jiahe Lin , George Michailidis

The human brain is a complex inter-wired system that emerges spontaneous functional fluctuations. In spite of tremendous success in the experimental neuroscience field, a system-level understanding of how brain anatomy supports various…

Neurons and Cognition · Quantitative Biology 2024-05-28 Tingting Dan , Ziquan Wei , Won Hwa Kim , Guorong Wu

In a number of disciplines, the data (e.g., graphs, manifolds) to be analyzed are non-Euclidean in nature. Geometric deep learning corresponds to techniques that generalize deep neural network models to such non-Euclidean spaces. Several…

Recent progress in geometric deep learning has drawn increasing attention from the machine learning community toward domain adaptation on symmetric positive definite (SPD) manifolds, especially for neuroimaging data that often suffer from…

Machine Learning · Computer Science 2025-05-09 Ce Ju , Cuntai Guan

The correlation matrix is a central representation of functional brain networks in neuroimaging. Traditional analyses often treat pairwise interactions independently in a Euclidean setting, overlooking the intrinsic geometry of correlation…

Machine Learning · Statistics 2025-04-10 Kisung You , Yelim Lee , Hae-Jeong Park

Artificial Recurrent Neural Networks (RNNs) are widely used in neuroscience to model the collective activity of neurons during behavioral tasks. The high dimensionality of their parameter and activity spaces, however, often make it…

Dynamical Systems · Mathematics 2025-10-16 Alice Marraffa , Renate Krause , Valerio Mante , George Haller

Matrix manifolds, such as manifolds of Symmetric Positive Definite (SPD) matrices and Grassmann manifolds, appear in many applications. Recently, by applying the theory of gyrogroups and gyrovector spaces that is a powerful framework for…

Machine Learning · Statistics 2023-06-06 Xuan Son Nguyen , Shuo Yang

Symmetric positive definite (SPD) matrix has been demonstrated to be an effective feature descriptor in many scientific areas, as it can encode spatiotemporal statistics of the data adequately on a curved Riemannian manifold, i.e., SPD…

Computer Vision and Pattern Recognition · Computer Science 2023-11-29 Rui Wang , Xiao-Jun Wu , Hui Li , Josef Kittler

Existing EEG foundation models mainly treat neural signals as generic time series in Euclidean space, ignoring the intrinsic geometric structure of neural dynamics that constrains brain activity to low-dimensional manifolds. This…

Machine Learning · Computer Science 2025-11-24 Yihang Fu , Lifang He , Qingyu Chen

Dynamical models estimate and predict the temporal evolution of physical systems. State Space Models (SSMs) in particular represent the system dynamics with many desirable properties, such as being able to model uncertainty in both the…

Machine Learning · Computer Science 2021-09-14 Changhao Chen , Chris Xiaoxuan Lu , Bing Wang , Niki Trigoni , Andrew Markham

Statistical neurodynamics studies macroscopic behaviors of randomly connected neural networks. We consider a deep layered feedforward network where input signals are processed layer by layer. The manifold of input signals is embedded in a…

Disordered Systems and Neural Networks · Physics 2018-08-23 Shun-ichi Amari , Ryo Karakida , Masafumi Oizumi

As a relatively new field, network neuroscience has tended to focus on aggregate behaviours of the brain averaged over many successive experiments or over long recordings in order to construct robust brain models. These models are limited…

Neurons and Cognition · Quantitative Biology 2022-05-19 James Wilsenach , Katie Warnaby , Charlotte M. Deane , Gesine Reinert

Effective analysis in neuroscience benefits significantly from robust conceptual frameworks. Traditional metrics of interbrain synchrony in social neuroscience typically depend on fixed, correlation-based approaches, restricting their…

Neurons and Cognition · Quantitative Biology 2025-12-01 Nicolás Hinrichs , Noah Guzmán , Melanie Weber

Decoding brain activity from electroencephalography (EEG) is crucial for neuroscience and clinical applications. Among recent advances in deep learning for EEG, geometric learning stands out as its theoretical underpinnings on symmetric…

Artificial Intelligence · Computer Science 2026-02-27 Haohui Jia , Zheng Chen , Lingwei Zhu , Xu Cao , Yasuko Matsubara , Takashi Matsubara , Yasushi Sakurai

Recently, the potential of dynamic brain networks as a neuroimaging biomarkers for mental illnesses is being increasingly recognized. However, there are several unmet challenges in developing such biomarkers, including the need for methods…

Neurons and Cognition · Quantitative Biology 2019-10-10 Suprateek Kundu , Jin Ming , Jennifer Stevens

Deep neural networks (DNNs) on Riemannian manifolds have garnered increasing interest in various applied areas. For instance, DNNs on spherical and hyperbolic manifolds have been designed to solve a wide range of computer vision and nature…

Machine Learning · Statistics 2026-01-06 Xuan Son Nguyen , Shuo Yang , Aymeric Histace

In neuroscience, functional brain connectivity describes the connectivity between brain regions that share functional properties. Neuroscientists often characterize it by a time series of covariance matrices between functional measurements…

Methodology · Statistics 2019-07-09 Zhenhua Lin , Dehan Kong , Qiang Sun
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