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Accurate identification of antiviral peptides (AVPs) is critical for accelerating novel drug development. However, current computational methods struggle to capture intricate sequence dependencies and effectively handle ambiguous,…

Machine Learning · Computer Science 2025-12-29 Xinru Wen , Weizhong Lin , Xuan Xiao

Prompt learning has been designed as an alternative to fine-tuning for adapting Vision-language (V-L) models to the downstream tasks. Previous works mainly focus on text prompt while visual prompt works are limited for V-L models. The…

Computer Vision and Pattern Recognition · Computer Science 2024-08-06 Chen Xu , Yuhan Zhu , Haocheng Shen , Boheng Chen , Yixuan Liao , Xiaoxin Chen , Limin Wang

Monocular 3D object detection typically relies on pseudo-labeling techniques to reduce dependency on real-world annotations. Recent advances demonstrate that deterministic linguistic cues can serve as effective auxiliary weak supervision…

Computer Vision and Pattern Recognition · Computer Science 2026-03-23 Chupeng Liu , Jiyong Rao , Shangquan Sun , Runkai Zhao , Weidong Cai

Virtual screening (VS) is an essential task in drug discovery, focusing on the identification of small-molecule ligands that bind to specific protein pockets. Existing deep learning methods, from early regression models to recent…

Machine Learning · Computer Science 2025-11-11 Bowei He , Bowen Gao , Yankai Chen , Yanyan Lan , Chen Ma , Philip S. Yu , Ya-Qin Zhang , Wei-Ying Ma

Recent advances in protein language models have catalyzed significant progress in peptide sequence representation. Despite extensive exploration in this field, pre-trained models tailored for peptide-specific needs remain largely…

Machine Learning · Computer Science 2024-01-23 Ruochi Zhang , Haoran Wu , Chang Liu , Huaping Li , Yuqian Wu , Kewei Li , Yifan Wang , Yifan Deng , Jiahui Chen , Fengfeng Zhou , Xin Gao

Accurate molecular property prediction (MPP) is a critical step in modern drug development. However, the scarcity of experimental validation data poses a significant challenge to AI-driven research paradigms. Under few-shot learning…

Machine Learning · Computer Science 2025-05-20 Yifan Dai , Xuanbai Ren , Tengfei Ma , Qipeng Yan , Yiping Liu , Yuansheng Liu , Xiangxiang Zeng

Pro-inflammatory peptides (PIPs) play critical roles in immune signaling and inflammation but are difficult to identify experimentally due to costly and time-consuming assays. To address this challenge, we present KEMP-PIP, a hybrid machine…

Quantitative Methods · Quantitative Biology 2026-02-25 Soumik Deb Niloy , Md. Fahmid-Ul-Alam Juboraj , Swakkhar Shatabda

Effective property prediction methods can help accelerate the search for COVID-19 antivirals either through accurate in-silico screens or by effectively guiding on-going at-scale experimental efforts. However, existing prediction tools have…

Quantitative Methods · Quantitative Biology 2020-05-08 Wengong Jin , Regina Barzilay , Tommi Jaakkola

Current multimodal large language models (MLLMs) struggle with hour-level video understanding, facing significant challenges not only in modeling the substantial information volume of long videos but also in overcoming the memory wall and…

Computer Vision and Pattern Recognition · Computer Science 2025-11-18 Hong Gao , Yiming Bao , Xuezhen Tu , Bin Zhong , Linan Yue , Minling Zhang

Virtual screening, which identifies potential drugs from vast compound databases to bind with a particular protein pocket, is a critical step in AI-assisted drug discovery. Traditional docking methods are highly time-consuming, and can only…

Machine Learning · Computer Science 2023-10-11 Bowen Gao , Bo Qiang , Haichuan Tan , Minsi Ren , Yinjun Jia , Minsi Lu , Jingjing Liu , Weiying Ma , Yanyan Lan

Visual prompting (VP) is an emerging parameter-efficient fine-tuning approach to adapting pre-trained vision models to solve various downstream image-classification tasks. However, there has hitherto been little systematic study of the…

Computer Vision and Pattern Recognition · Computer Science 2024-03-12 Hsi-Ai Tsao , Lei Hsiung , Pin-Yu Chen , Sijia Liu , Tsung-Yi Ho

Polyp detectors trained on clean datasets often underperform in real-world endoscopy, where illumination changes, motion blur, and occlusions degrade image quality. Existing approaches struggle with the domain gap between controlled…

Computer Vision and Pattern Recognition · Computer Science 2025-12-17 Shengkai Xu , Hsiang Lun Kao , Tianxiang Xu , Honghui Zhang , Junqiao Wang , Runmeng Ding , Guanyu Liu , Tianyu Shi , Zhenyu Yu , Guofeng Pan , Ziqian Bi , Yuqi Ouyang

The integration of visual and textual data in Vision-Language Pre-training (VLP) models is crucial for enhancing vision-language understanding. However, the adversarial robustness of these models, especially in the alignment of image-text…

Multimedia · Computer Science 2025-06-03 Youze Wang , Wenbo Hu , Yinpeng Dong , Hanwang Zhang , Hang Su , Richang Hong

Infectious diseases continue to pose a serious threat to public health, underscoring the urgent need for effective computational approaches to screen novel anti-infective agents. Oligopeptides have emerged as promising candidates in…

Machine Learning · Computer Science 2025-09-25 Dayu Tan , Jing Chen , Xiaoping Zhou , Yansen Su , Chunhou Zheng

Large pre-trained Vision-Language Models (VLMs) such as Contrastive Language-Image Pre-training (CLIP) have been shown to be susceptible to adversarial attacks, raising concerns about their deployment in safety-critical applications like…

Computer Vision and Pattern Recognition · Computer Science 2025-09-17 Lin Luo , Xin Wang , Bojia Zi , Shihao Zhao , Xingjun Ma , Yu-Gang Jiang

Visual and audio signals often coexist in natural environments, forming audio-visual events (AVEs). Given a video, we aim to localize video segments containing an AVE and identify its category. It is pivotal to learn the discriminative…

Computer Vision and Pattern Recognition · Computer Science 2022-11-21 Jinxing Zhou , Dan Guo , Meng Wang

Properties of molecules are indicative of their functions and thus are useful in many applications. With the advances of deep learning methods, computational approaches for predicting molecular properties are gaining increasing momentum.…

Quantitative Methods · Quantitative Biology 2021-07-07 Zhengyang Wang , Meng Liu , Youzhi Luo , Zhao Xu , Yaochen Xie , Limei Wang , Lei Cai , Qi Qi , Zhuoning Yuan , Tianbao Yang , Shuiwang Ji

Accurate drug-target interaction (DTI) prediction is essential for computational drug discovery, yet existing models often rely on single-modality predefined molecular descriptors or sequence-based embeddings with limited…

We present a novel approach for inspecting variable data prints (VDP) with an ultra-low false alarm rate (0.005%) and potential applicability to other real-world problems. The system is based on a comparison between two images: a reference…

Computer Vision and Pattern Recognition · Computer Science 2020-01-14 Oren Haik , Oded Perry , Eli Chen , Peter Klammer

With the rapid advancement of multimodal learning, pre-trained Vision-Language Models (VLMs) such as CLIP have demonstrated remarkable capacities in bridging the gap between visual and language modalities. However, these models remain…

Computer Vision and Pattern Recognition · Computer Science 2024-08-20 Jiaming Zhang , Xingjun Ma , Xin Wang , Lingyu Qiu , Jiaqi Wang , Yu-Gang Jiang , Jitao Sang
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