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Designing a neural network architecture for molecular representation is crucial for AI-driven drug discovery and molecule design. In this work, we propose a new framework for molecular representation learning. Our contribution is threefold:…

Machine Learning · Computer Science 2022-10-18 Jiye Kim , Seungbeom Lee , Dongwoo Kim , Sungsoo Ahn , Jaesik Park

Recently Transformer-based models have advanced point cloud understanding by leveraging self-attention mechanisms, however, these methods often overlook latent information in less prominent regions, leading to increased sensitivity to…

Computer Vision and Pattern Recognition · Computer Science 2024-11-25 Yi Wang , Jiaze Wang , Ziyu Guo , Renrui Zhang , Donghao Zhou , Guangyong Chen , Anfeng Liu , Pheng-Ann Heng

The simulation of large-scale systems with complex electron interactions remains one of the greatest challenges for the atomistic modeling of materials. Although classical force fields often fail to describe the coupling between electronic…

Machine learning (ML) is transforming all areas of science. The complex and time-consuming calculations in molecular simulations are particularly suitable for a machine learning revolution and have already been profoundly impacted by the…

Chemical Physics · Physics 2019-11-11 Frank Noé , Alexandre Tkatchenko , Klaus-Robert Müller , Cecilia Clementi

We develop a neuroevolution-potential (NEP) framework for generating neural network based machine-learning potentials. They are trained using an evolutionary strategy for performing large-scale molecular dynamics (MD) simulations. A…

Computational Physics · Physics 2022-01-25 Zheyong Fan , Zezhu Zeng , Cunzhi Zhang , Yanzhou Wang , Haikuan Dong , Yue Chen , Tapio Ala-Nissila

We designed a procedure to train a machine learning interatomic potential (MLIP) at benchmark-quality quantum Monte Carlo (QMC) accuracy. To avoid the complexities of high-quality atomic force determination with the stochastic QMC methods,…

Materials Science · Physics 2026-05-22 Adam Hložný , Ján Brndiar , Ye Luo , Ivan Štich

As data science continues to grow in popularity, there will be an increasing need to make data science tools more scalable, flexible, and accessible. In particular, automated machine learning (AutoML) systems seek to automate the process of…

Neural and Evolutionary Computing · Computer Science 2016-08-01 Randal S. Olson , Jason H. Moore

Amorphous materials are coming within reach of realistic computer simulations, but new approaches are needed to fully understand their intricate atomic structures. Here, we show how machine-learning (ML)-based techniques can give new,…

Perfectly-Matched Layers (PML) are widely used in Particle-In-Cell simulations, in order to absorb electromagnetic waves that propagate out of the simulation domain. However, when charged particles cross the interface between the simulation…

Plasma Physics · Physics 2022-09-02 Remi Lehe , Aurore Blelly , Lorenzo Giacomel , Revathi Jambunathan , Jean-Luc Vay

Advances in computational chemistry have produced high-dimensional datasets on atmospherically relevant molecules. To aid exploration of such datasets, particularly for the study of atmospheric aerosol formation, we introduce PhiPlot: a…

Human-Computer Interaction · Computer Science 2026-03-13 Matias Loukojärvi , Ananth Mahadevan , Katsiaryna Haitsiukevich , Kai Puolamäki

Last year, multimodal architectures served up a revolution in AI-based approaches and solutions, extending the capabilities of large language models (LLM). We propose an \textit{OmniFusion} model based on a pretrained LLM and adapters for…

Computer Vision and Pattern Recognition · Computer Science 2024-04-10 Elizaveta Goncharova , Anton Razzhigaev , Matvey Mikhalchuk , Maxim Kurkin , Irina Abdullaeva , Matvey Skripkin , Ivan Oseledets , Denis Dimitrov , Andrey Kuznetsov

Despite rapid advances in molecular and materials machine learning, most models still lack physical transferability: they fit correlations across whole molecules or crystals rather than learning the quantum interactions between atomic…

Computer Vision and Pattern Recognition · Computer Science 2025-12-02 Can Polat , Erchin Serpedin , Mustafa Kurban , Hasan Kurban

Universal machine-learned interatomic potentials (uMLIPs) offer a promising approach to performing atomistic simulations at near-DFT accuracy with greatly reduced computational cost. Here, we present a new high-temperature benchmarking…

Materials Science · Physics 2026-04-29 Connor W. Edwards , Jack D. Evans

Recent years have witnessed the fast development of machine learning potentials (MLPs) and their widespread applications in chemistry, physics, and material science. By fitting discrete ab initio data faithfully to continuous and…

Chemical Physics · Physics 2025-05-13 Junfan Xia , Yaolong Zhang , Bin Jiang

Given the power of large language and large vision models, it is of profound and fundamental interest to ask if a foundational model based on data and parameter scaling laws and pre-training strategies is possible for learned simulations of…

Machine-learning potentials (MLPs) have become important tools for modern molecular simulations. However, developing models that simultaneously achieve high accuracy and high computational efficiency remains a significant challenge. In this…

Chemical Physics · Physics 2026-02-17 Xinze Li , Ruitao Ma , Chen Qu , Dong H. Zhang , Qi Yu

First principles based exploration of chemical space deepens our understanding of chemistry, and might help with the design of new materials or experiments. Due to the computational cost of quantum chemistry methods and the immens number of…

Chemical Physics · Physics 2020-08-18 Bing Huang , O. Anatole von Lilienfeld

The choice of unfolding method for a cross-section measurement is tightly coupled to the model dependence of the efficiency correction and the overall impact of cross-section modeling uncertainties in the analysis. A key issue is the…

Data Analysis, Statistics and Probability · Physics 2025-07-14 Roger G. Huang , Andrew Cudd , Masaki Kawaue , Tatsuya Kikawa , Benjamin Nachman , Vinicius Mikuni , Callum Wilkinson

Recent Vision-Language Models (VLMs) \textit{e.g.} CLIP have made great progress in video recognition. Despite the improvement brought by the strong visual backbone in extracting spatial features, CLIP still falls short in capturing and…

Computer Vision and Pattern Recognition · Computer Science 2024-08-13 Mushui Liu , Bozheng Li , Yunlong Yu

While deep learning is transforming data analysis in high-energy physics, computational challenges limit its potential. We address these challenges in the context of collider physics by introducing EveNet, an event-level foundation model…

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