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Related papers: M^4olGen: Multi-Agent, Multi-Stage Molecular Gener…

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We present CODE-GEN, a human-in-the-Loop, retrieval-augmented generation (RAG)-based agentic AI system for generating context-aligned multiple-choice questions to develop student code reasoning and comprehension abilities. CODE-GEN employs…

Artificial Intelligence · Computer Science 2026-04-09 Xiaojing Duan , Frederick Nwanganga , Chaoli Wang

Molecular optimization is a crucial yet complex and time-intensive process that often acts as a bottleneck for drug development. Traditional methods rely heavily on trial and error, making multi-objective optimization both time-consuming…

Biomolecules · Quantitative Biology 2025-03-06 Jiajun Yu , Yizhen Zheng , Huan Yee Koh , Shirui Pan , Tianyue Wang , Haishuai Wang

Hallucinations in large language models (LLMs), defined as fluent yet incorrect or incoherent outputs, pose a significant challenge to the automatic generation of educational multiple-choice questions (MCQs). We identified four key…

Computation and Language · Computer Science 2026-01-22 Nicholas X. Wang , Aggelos K. Katsaggelos

In drug discovery, molecular optimization aims to iteratively refine a lead compound to improve molecular properties while preserving structural similarity to the original molecule. However, each oracle evaluation is expensive, making…

Machine Learning · Computer Science 2026-04-15 Ziqing Wang , Yibo Wen , Abhishek Pandy , Han Liu , Kaize Ding

The emergence of large language models (LLMs) has revolutionized the capabilities of text comprehension and generation. Multi-modal generation attracts great attention from both the industry and academia, but there is little work on…

Information Retrieval · Computer Science 2024-04-16 Xiaoteng Shen , Rui Zhang , Xiaoyan Zhao , Jieming Zhu , Xi Xiao

Human spatiotemporal behavior simulation is critical for urban planning research, yet traditional rule-based and statistical approaches suffer from high computational costs, limited generalizability, and poor scalability. While large…

Artificial Intelligence · Computer Science 2025-06-13 Yu Zhang , Yang Hu , De Wang

We introduce MolMiner, a fragment-based, geometry-aware, and order-agnostic autoregressive model for molecular design. MolMiner supports conditional generation of molecules over twelve properties, enabling flexible control across…

Machine Learning · Computer Science 2025-05-27 Raul Ortega-Ochoa , Tejs Vegge , Jes Frellsen

Few-step generation has been a long-standing goal, with recent one-step generation methods exemplified by MeanFlow achieving remarkable results. Existing research on MeanFlow primarily focuses on class-to-image generation. However, an…

Computer Vision and Pattern Recognition · Computer Science 2026-04-21 Chenxi Zhao , Chen Zhu , Xiaokun Feng , Aiming Hao , Jiashu Zhu , Jiachen Lei , Jiahong Wu , Xiangxiang Chu , Jufeng Yang

The performance gap between closed-source and open-source large language models (LLMs) is largely attributed to disparities in access to high-quality training data. To bridge this gap, we introduce a novel framework for the automated…

Large Language Models (LLMs) have shown incredible potential in code generation tasks, and recent research in prompt engineering have enhanced LLMs' understanding of textual information. However, ensuring the accuracy of generated code…

Software Engineering · Computer Science 2024-10-04 Haolin Jin , Zechao Sun , Huaming Chen

The aim of the inverse chemical design is to develop new molecules with given optimized molecular properties or objectives. Recently, generative deep learning (DL) networks are considered as the state-of-the-art in inverse chemical design…

Machine Learning · Computer Science 2019-10-10 Haoran Wei , Mariefel Olarte , Garrett B. Goh

Large Language Models (LLMs) often produce answers with a single chain-of-thought, which restricts their ability to explore reasoning paths or self-correct flawed outputs in complex tasks. In this paper, we introduce MALT (Multi-Agent LLM…

Large language models (LLMs) have recently shown strong progress on scientific reasoning, yet two major bottlenecks remain. First, explicit retrieval fragments reasoning, imposing a hidden "tool tax" of extra tokens and steps. Second,…

The code written by developers usually suffers from efficiency problems and contain various performance bugs. These inefficiencies necessitate the research of automated refactoring methods for code optimization. Early research in code…

Software Engineering · Computer Science 2024-08-23 Shuzheng Gao , Cuiyun Gao , Wenchao Gu , Michael Lyu

While Large Language Models (LLMs) have demonstrated remarkable progress in generating functionally correct Solidity code, they continue to face critical challenges in producing gas-efficient and secure code, which are critical requirements…

Software Engineering · Computer Science 2025-10-01 Zhiyuan Peng , Xin Yin , Chenhao Ying , Chao Ni , Yuan Luo

Diffusion models have shown promise in text generation, but often struggle with generating long, coherent, and contextually accurate text. Token-level diffusion doesn't model word-order dependencies explicitly and operates on short, fixed…

Computation and Language · Computer Science 2025-05-27 Xiaochen Zhu , Georgi Karadzhov , Chenxi Whitehouse , Andreas Vlachos

In recent years, large language models (LLMs) have made remarkable progress, with model optimization primarily relying on gradient-based optimizers such as Adam. However, these gradient-based methods impose stringent hardware requirements,…

Artificial Intelligence · Computer Science 2025-10-24 WenTao Liu , Siyu Song , Hao Hao , Aimin Zhou

Foundation models are becoming valuable tools in medicine. Yet despite their promise, the best way to leverage Large Language Models (LLMs) in complex medical tasks remains an open question. We introduce a novel multi-agent framework, named…

Computation and Language · Computer Science 2024-10-31 Yubin Kim , Chanwoo Park , Hyewon Jeong , Yik Siu Chan , Xuhai Xu , Daniel McDuff , Hyeonhoon Lee , Marzyeh Ghassemi , Cynthia Breazeal , Hae Won Park

Understanding complex biomolecular mechanisms requires multi-step reasoning across molecular interactions, signaling cascades, and metabolic pathways. While large language models(LLMs) show promise in such tasks, their application to…

Artificial Intelligence · Computer Science 2025-11-12 Tianwen Lyu , Xiang Zhuang , Keyan Ding , Xinzhe Cao , Lei Liang , Wei Zhao , Qiang Zhang , Huajun Chen

Multimodal Large Language Models (MLLMs) with unified architectures excel across a wide range of vision-language tasks, yet aligning them with personalized image generation remains a significant challenge. Existing methods for MLLMs are…

Computer Vision and Pattern Recognition · Computer Science 2025-08-27 Qian Liang , Yujia Wu , Kuncheng Li , Jiwei Wei , Shiyuan He , Jinyu Guo , Ning Xie