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Motivation: Building and iterating machine learning models is often a resource-intensive process. In biomedical research, scientific codebases can lack scalability and are not easily transferable to work beyond what they were intended.…

Machine Learning · Computer Science 2025-04-03 Khoa A. Tran , John V. Pearson , Nicola Waddell

Collecting flow records is a common practice of network operators and researchers for monitoring, diagnosing and understanding a network. Traditional tools like NetFlow face great challenges when both the speed and the complexity of the…

Networking and Internet Architecture · Computer Science 2018-12-06 Zongyi Zhao , Xingang Shi , Xia Yin , Zhiliang Wang

Repository-level code editing requires models to understand complex dependencies and execute precise multi-file modifications across a large codebase. While recent gains on SWE-bench rely heavily on complex agent scaffolding, it remains…

Software Engineering · Computer Science 2026-02-10 Qinglin Zhu , Tianyu Chen , Shuai Lu , Lei Ji , Runcong Zhao , Murong Ma , Xiangxiang Dai , Yulan He , Lin Gui , Peng cheng , Yeyun Gong

Achieving mastery in real world software engineering tasks is fundamentally bottlenecked by the scarcity of large scale, high quality training data. Scaling such data has been limited by the complexity of environment setup, unit test…

Bioinformatics workflows are essential for complex biological data analyses and are often described in scientific articles with source code in public repositories. Extracting detailed workflow information from articles can improve…

Computation and Language · Computer Science 2025-03-11 Clémence Sebe , Sarah Cohen-Boulakia , Olivier Ferret , Aurélie Névéol

Agile software development is nowadays a widely adopted practise in both open-source and industrial software projects. Agile teams typically heavily rely on issue management tools to document new issues and keep track of outstanding ones,…

Software Engineering · Computer Science 2022-02-03 Vali Tawosi , Afnan Al-Subaihin , Rebecca Moussa , Federica Sarro

Large Language Models (LLMs) have demonstrated remarkable proficiency across a variety of complex tasks. One significant application of LLMs is in tackling software engineering challenges, particularly in resolving real-world tasks on…

Computation and Language · Computer Science 2025-05-08 Chengxing Xie , Bowen Li , Chang Gao , He Du , Wai Lam , Difan Zou , Kai Chen

Software engineering (SWE) has recently emerged as a crucial testbed for next-generation LLM agents, demanding inherent capabilities in two critical dimensions: sustained iterative problem-solving (e.g., >50 interaction rounds) and…

Artificial Intelligence · Computer Science 2025-06-25 Liang Zeng , Yongcong Li , Yuzhen Xiao , Changshi Li , Chris Yuhao Liu , Rui Yan , Tianwen Wei , Jujie He , Xuchen Song , Yang Liu , Yahui Zhou

Software testing is crucial for ensuring the correctness and reliability of software systems. Automated generation of issue reproduction tests from natural language issue descriptions enhances developer productivity by simplifying root…

Software Engineering · Computer Science 2026-01-21 Aditya Bharat Soni , Rajat Ghosh , Vaishnavi Bhargava , Valerie Chen , Debojyoti Dutta

GitHub introduced the suggestion feature to enable reviewers to explicitly suggest code modifications in pull requests. These suggestions make the reviewers' feedback more actionable for the submitters and represent a valuable knowledge for…

Software Engineering · Computer Science 2025-02-10 Abir Bouraffa , Yen Dieu Pham , Walid Maalej

This paper documents the experience improving the performance of a data processing workflow for analysis of the Human Connectome Project's HCP900 data set. It describes how network and compute bottlenecks were discovered and resolved during…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-09-10 John-Paul Robinson , Thomas Anthony , Ravi Tripathi , Sara A. Sims , Kristina M. Visscher , Purushotham V. Bangalore

Large language models (LLMs) have recently gained prominence in the field of software development, significantly boosting productivity and simplifying teamwork. Although prior studies have examined task-specific applications, the…

Software Engineering · Computer Science 2025-11-14 Antonio Collante , Samuel Abedu , SayedHassan Khatoonabadi , Ahmad Abdellatif , Ebube Alor , Emad Shihab

With the growing adoption of Software Defined Networking (SDN) and Network Function Virtualization (NFV), large-scale NFV infrastructure deployments are gaining momentum. Such infrastructures are home to thousands of network Service…

Networking and Internet Architecture · Computer Science 2018-10-17 Saifeddine Aidi , Mohamed Faten Zhani , Yehia Elkhatib

Context: Mining software repositories is a popular means to gain insights into a software project's evolution, monitor project health, support decisions and derive best practices. Tools supporting the mining process are commonly applied by…

Software Engineering · Computer Science 2025-11-13 Nicole Hoess , Carlos Paradis , Rick Kazman , Wolfgang Mauerer

Industrial recommendation systems (RS) rely on the multi-stage pipeline to balance effectiveness and efficiency when delivering items from a vast corpus to users. Existing RS benchmark datasets primarily focus on the exposure space, where…

Information Retrieval · Computer Science 2024-10-29 Qi Liu , Kai Zheng , Rui Huang , Wuchao Li , Kuo Cai , Yuan Chai , Yanan Niu , Yiqun Hui , Bing Han , Na Mou , Hongning Wang , Wentian Bao , Yunen Yu , Guorui Zhou , Han Li , Yang Song , Defu Lian , Kun Gai

Motivation: Quality control of genomic data is an essential but complicated multi-step procedure, often requiring separate installation and expert familiarity with a combination of disparate bioinformatics tools. Results: To provide an…

Genomics · Quantitative Biology 2021-05-06 Christina Vasilopoulou , Benjamin Wingfield , Andrew P. Morris , William Duddy

The rapid adoption of large language models (LLMs) like ChatGPT has introduced new dynamics in software development, particularly within pull request workflows. While prior research has examined the quality of AI-generated code, less is…

Software Engineering · Computer Science 2026-04-07 Daniel Ogenrwot , John Businge

We address the challenges associated with deploying neural networks on CPUs, with a particular focus on minimizing inference time while maintaining accuracy. Our novel approach is to use the dataflow (i.e., computation order) of a neural…

Hardware Architecture · Computer Science 2023-11-27 Cyrus Zhou , Zack Hassman , Ruize Xu , Dhirpal Shah , Vaugnn Richard , Yanjing Li

Context: Software start-ups are emerging as suppliers of innovation and software-intensive products. However, traditional software engineering practices are not evaluated in the context, nor adopted to goals and challenges of start-ups. As…

Pull request (PR) based development, which is a norm for the social coding platforms, entails the challenge of evaluating the contributions of, often unfamiliar, developers from across the open source ecosystem and, conversely, submitting a…

Software Engineering · Computer Science 2020-07-21 Tapajit Dey , Audris Mockus
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