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We develop a Fluctuating Immersed Boundary (FIB) method for performing Brownian dynamics simulations of confined particle suspensions. Unlike traditional methods which employ analytical Green's functions for Stokes flow in the confined…

Soft Condensed Matter · Physics 2015-06-29 S. Delong , F. Balboa Usabiaga , R. Delgado-Buscalioni , B. E. Griffith , A. Donev

Active matter spans a wide range of time and length scales, from groups of cells and synthetic self-propelled particles to schools of fish, flocks of birds, or even human crowds. The theoretical framework describing these systems has shown…

We investigate the approximate dynamics of several differential equations when the solutions are restricted to a sparse subset of a given basis. The restriction is enforced at every time step by simply applying soft thresholding to the…

Numerical Analysis · Mathematics 2015-06-12 Hayden Schaeffer , Stanley Osher , Russel Caflisch , Cory Hauck

Stable dynamical systems are a flexible tool to plan robotic motions in real-time. In the robotic literature, dynamical system motions are typically planned without considering possible limitations in the robot's workspace. This work…

Robotics · Computer Science 2020-03-26 Matteo Saveriano , Dongheui Lee

Our ability to numerically model and understand the complex flow behavior of solid-bearing suspensions has increased significantly over the last couple of years, partly due to direct numerical simulations that compute flow around individual…

Computational Physics · Physics 2019-03-21 Zhipeng Qin , Kali Alison , Jenny Suckale

When studying the motion of optically trapped particles on the $\mu s$ time scale, in low viscous media such as air, inertia cannot be neglected. Resolution of unusual and interesting behaviour not seen in colloidal trapping experiments is…

Soft Condensed Matter · Physics 2015-03-13 D. R. Burnham , P. J. Reece , D. McGloin

In this review we summarize theoretical progress in the field of active matter, placing it in the context of recent experiments. Our approach offers a unified framework for the mechanical and statistical properties of living matter:…

Soft Condensed Matter · Physics 2012-07-13 M. C. Marchetti , J. -F. Joanny , S. Ramaswamy , T. B. Liverpool , J. Prost , Madan Rao , R. Aditi Simha

When immersed into a fluid of active Brownian particles, passive bodies might start to undergo linear or angular directed motion depending on their shape. Here we exploit the divergence theorem to relate the forces responsible for this…

Soft Condensed Matter · Physics 2021-04-14 Thomas Speck , Ashreya Jayaram

Elastohydrodynamic lubrication, or simply soft lubrication, refers to the motion of deformable objects near a boundary lubricated by a fluid, and is one of the key physical mechanisms to minimise friction and wear in natural and engineered…

Fluid Dynamics · Physics 2021-04-07 Martin Essink , Anupam Pandey , Stefan Karpitschka , Kees Venner , Jacco Snoeijer

In the last decade, the study of pressure in active matter has attracted growing attention due to its fundamental relevance to nonequilibrium statistical physics. Active matter systems are composed of particles that consume energy to…

Soft Condensed Matter · Physics 2025-08-14 Guo Yu , Ruiyao Li , Fukang Li , Jiayu Zhang , Xiyue Li , Zequ Chen , Joscha Mecke , Yongxiang Gao

Cells and other soft particles are often forced to flow in confined geometries in both laboratory and natural environments, where the elastic deformation induces an additional drag and pressure drop across the particle. In contrast with…

Fluid Dynamics · Physics 2025-07-09 Charles Paul Moore , Hiba Belkadi , Brouna Safi , Gabriel Amselem , Charles N. Baroud

While the dynamics of polymer chains in equilibrium media is well understood by now, the polymer dynamics in active non-equilibrium environments can be very different. Here we study the dynamics of polymers in a viscous medium containing…

Soft Condensed Matter · Physics 2017-06-23 Jaeoh Shin , Andrey G. Cherstvy , Won Kyu Kim , Vasily Zaburdaev

We consider a finite or countable collection of one-dimensional Brownian particles whose dynamics at any point in time is determined by their rank in the entire particle system. Using Transportation Cost Inequalities for stochastic…

Probability · Mathematics 2010-11-11 Soumik Pal , Mykhaylo Shkolnikov

We study the dynamics of overdamped Brownian particles interacting through soft pairwise potentials on a comb-like structure. Within the linearized Dean-Kawasaki framework, we characterize the particle density fluctuations by computing…

Statistical Mechanics · Physics 2025-05-21 Davide Venturelli , Pierre Illien , Aurélien Grabsch , Olivier Bénichou

Brownian motion is a ubiquitous physical phenomenon across the sciences. After its discovery by Brown and intensive study since the first half of the 20th century, many different aspects of Brownian motion and stochastic processes in…

Statistical Mechanics · Physics 2020-01-29 Ralf Metzler

Sticky Brownian motion is the simplest example of a diffusion process that can spend finite time both in the interior of a domain and on its boundary. It arises in various applications such as in biology, materials science, and finance.…

Numerical Analysis · Mathematics 2020-07-21 Nawaf Bou-Rabee , Miranda Holmes-Cerfon

We propose a general framework to study transformations that drive an underdamped Brownian particle in contact with a thermal bath from an equilibrium state to a new one in an arbitrarily short time. To this end, we make use of a time and…

Statistical Mechanics · Physics 2019-01-21 Marie Chupeau , Sergio Ciliberto , David Guéry-Odelin , Emmanuel Trizac

The transport of active particles may occur in complex environments, in which it emerges from the interplay between the mobility of the active components and the quenched disorder of the environment. Here we explore structural and dynamical…

Soft Condensed Matter · Physics 2023-03-31 Fergus J. Moore , John Russo Tanniemola B. Liverpool , C. Patrick Royall

An increasing variety of crystal structures has been observed in soft condensed matter over the past two decades, surpassing most expectations for the diversity of arrangements accessible through classical driving forces. Here, we survey…

Soft Condensed Matter · Physics 2022-03-01 Julia Dshemuchadse

Biased diffusive transport of Brownian particles through irregularly shaped, narrow confining quasi-one-dimensional structures is investigated. The complexity of the higher dimensional diffusive dynamics is reduced by means of the so-called…

Statistical Mechanics · Physics 2009-09-22 P. Sekhar Burada , Gerhard Schmid , Peter Hänggi
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