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The maximum common subtree isomorphism problem asks for the largest possible isomorphism between subtrees of two given input trees. This problem is a natural restriction of the maximum common subgraph problem, which is ${\sf NP}$-hard in…

Data Structures and Algorithms · Computer Science 2016-08-23 Andre Droschinsky , Nils M. Kriege , Petra Mutzel

Graph sparsification underlies a large number of algorithms, ranging from approximation algorithms for cut problems to solvers for linear systems in the graph Laplacian. In its strongest form, "spectral sparsification" reduces the number of…

Quantum Physics · Physics 2023-05-09 Simon Apers , Ronald de Wolf

A dynamic graph algorithm is a data structure that answers queries about a property of the current graph while supporting graph modifications such as edge insertions and deletions. Prior work has shown strong conditional lower bounds for…

Data Structures and Algorithms · Computer Science 2023-01-30 Monika Henzinger , Ami Paz , A. R. Sricharan

We significantly improve known time bounds for solving the minimum cut problem on undirected graphs. We use a ``semi-duality'' between minimum cuts and maximum spanning tree packings combined with our previously developed random sampling…

Data Structures and Algorithms · Computer Science 2007-05-23 David R. Karger

We present two algorithms for dynamically maintaining a spanning forest of a graph undergoing edge insertions and deletions. Our algorithms guarantee {\em worst-case update time} and work against an adaptive adversary, meaning that an edge…

Data Structures and Algorithms · Computer Science 2017-04-19 Danupon Nanongkai , Thatchaphol Saranurak

The recently introduced graph parameter tree-cut width plays a similar role with respect to immersions as the graph parameter treewidth plays with respect to minors. In this paper, we provide the first algorithmic applications of tree-cut…

Data Structures and Algorithms · Computer Science 2022-06-03 Robert Ganian , Eun Jung Kim , Stefan Szeider

Problems in scientific computing, such as distributing large sparse matrix operations, have analogous formulations as hypergraph partitioning problems. A hypergraph is a generalization of a traditional graph wherein "hyperedges" may connect…

Data Structures and Algorithms · Computer Science 2022-06-16 Justin Sybrandt , Ruslan Shaydulin , Ilya Safro

We devise new cut sparsifiers that are related to the classical sparsification of Nagamochi and Ibaraki [Algorithmica, 1992], which is an algorithm that, given an unweighted graph $G$ on $n$ nodes and a parameter $k$, computes a subgraph…

Data Structures and Algorithms · Computer Science 2021-11-01 Amir Abboud , Robert Krauthgamer , Ohad Trabelsi

We present a graph-theoretic modeling approach for hierarchical optimization that leverages the OptiGraph abstraction implemented in the Julia package Plasmo.jl. We show that the abstraction is flexible and can effectively capture complex…

Optimization and Control · Mathematics 2026-01-19 David L. Cole , Filippo Pecci , Omar J. Guerra , Harsha Gangammanavar , Jesse D. Jenkins , Victor M. Zavala

We develop a framework for applying treewidth-based dynamic programming on graphs with "hybrid structure", i.e., with parts that may not have small treewidth but instead possess other structural properties. Informally, this is achieved by…

Data Structures and Algorithms · Computer Science 2019-08-28 Eduard Eiben , Robert Ganian , Thekla Hamm , O-joung Kwon

Motivated by an application in computational topology, we consider a novel variant of the problem of efficiently maintaining dynamic rooted trees. This variant requires merging two paths in a single operation. In contrast to the standard…

Data Structures and Algorithms · Computer Science 2007-11-13 Loukas Georgiadis , Haim Kaplan , Nira Shafrir , Robert E. Tarjan , Renato F. Werneck

In this paper, we consider two fundamental cut approximation problems on large graphs. We prove new lower bounds for both problems that are optimal up to logarithmic factors. The first problem is to approximate cuts in balanced directed…

Data Structures and Algorithms · Computer Science 2024-06-21 Yu Cheng , Max Li , Honghao Lin , Zi-Yi Tai , David P. Woodruff , Jason Zhang

Biology presents many examples of planar distribution and structural networks having dense sets of closed loops. An archetype of this form of network organization is the vasculature of dicotyledonous leaves, which showcases a…

Quantitative Methods · Quantitative Biology 2015-05-30 Eleni Katifori , Marcelo O. Magnasco

The aim of this paper is to provide a review of structural decomposition methods in discrete optimization and to give a unified framework in the form of local elimination algorithms (LEA). This paper is organized as follows. Local…

Discrete Mathematics · Computer Science 2009-01-27 Oleg Shcherbina

This paper presents new deterministic and distributed low-diameter decomposition algorithms for weighted graphs. In particular, we show that if one can efficiently compute approximate distances in a parallel or a distributed setting, one…

Data Structures and Algorithms · Computer Science 2022-09-07 Václav Rozhoň , Michael Elkin , Christoph Grunau , Bernhard Haeupler

In graph sparsification, the goal has almost always been of {global} nature: compress a graph into a smaller subgraph ({sparsifier}) that maintains certain features of the original graph. Algorithms can then run on the sparsifier, which in…

Data Structures and Algorithms · Computer Science 2021-05-06 Shay Solomon

The automaton constrained tree knapsack problem is a variant of the knapsack problem in which the items are associated with the vertices of the tree, and we can select a subset of items that is accepted by a top-down tree automaton. If the…

Data Structures and Algorithms · Computer Science 2018-09-18 Soh Kumabe , Takanori Maehara , Ryoma Sin'ya

An algorithm is presented that solves the Minimum Dominating Set problem exactly using polynomial space based on dynamic programming for a tree decomposition. A direct application of dynamic programming based on a tree decomposition would…

Data Structures and Algorithms · Computer Science 2017-11-29 Mahdi Belbasi , Martin Fürer

We present a novel algorithm for the minimum-depth elimination tree problem, which is equivalent to the optimal treedepth decomposition problem. Our algorithm makes use of two cheaply-computed lower bound functions to prune the search tree,…

Discrete Mathematics · Computer Science 2020-06-18 James Trimble

Mining large graphs for information is becoming an increasingly important workload due to the plethora of graph structured data becoming available. An aspect of graph algorithms that has hitherto not received much interest is the effect of…

Data Structures and Algorithms · Computer Science 2012-03-27 Amitabha Roy