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Large language models (LLMs) are deployed on increasingly complex tasks that require multi-step decision-making. Understanding their algorithmic reasoning abilities is therefore crucial. However, we lack a diagnostic benchmark for…

Machine Learning · Computer Science 2026-02-12 Yu He , Yingxi Li , Colin White , Ellen Vitercik

This paper demonstrates that language models are strong structure-based protein designers. We present LM-Design, a generic approach to reprogramming sequence-based protein language models (pLMs), that have learned massive sequential…

Machine Learning · Computer Science 2023-02-10 Zaixiang Zheng , Yifan Deng , Dongyu Xue , Yi Zhou , Fei YE , Quanquan Gu

Typical evaluations of Large Language Models (LLMs) report a single metric per dataset, often representing the model's best-case performance under carefully selected settings. Unfortunately, this approach overlooks model robustness and…

Computation and Language · Computer Science 2025-03-04 Grigor Nalbandyan , Rima Shahbazyan , Evelina Bakhturina

Recent work on word ordering has argued that syntactic structure is important, or even required, for effectively recovering the order of a sentence. We find that, in fact, an n-gram language model with a simple heuristic gives strong…

Computation and Language · Computer Science 2016-09-27 Allen Schmaltz , Alexander M. Rush , Stuart M. Shieber

Large language models (LLMs) trained with canonical tokenization exhibit surprising robustness to non-canonical inputs such as character-level tokenization, yet the mechanisms underlying this robustness remain unclear. We study this…

Computation and Language · Computer Science 2026-03-12 Zhipeng Yang , Shu Yang , Lijie Hu , Di Wang

Recent large language models (LLMs) demonstrate impressive capabilities in handling long contexts, some exhibiting near-perfect recall on synthetic retrieval tasks. However, these evaluations have mainly focused on English text and involved…

Computation and Language · Computer Science 2024-10-15 Ameeta Agrawal , Andy Dang , Sina Bagheri Nezhad , Rhitabrat Pokharel , Russell Scheinberg

Prompt Recovery, reconstructing prompts from the outputs of large language models (LLMs), has grown in importance as LLMs become ubiquitous. Most users access LLMs through APIs without internal model weights, relying only on outputs and…

Computation and Language · Computer Science 2025-04-08 Shenyang Liu , Yang Gao , Shaoyan Zhai , Liqiang Wang

Recovering the structure of causal graphical models from observational data is an essential yet challenging task for causal discovery in scientific scenarios. Domain-specific causal discovery usually relies on expert validation or prior…

Artificial Intelligence · Computer Science 2025-08-27 Taiyu Ban , Lyuzhou Chen , Derui Lyu , Xiangyu Wang , Qinrui Zhu , Qiang Tu , Huanhuan Chen

Large language models (LLMs) obtain state of the art zero shot relevance ranking performance on a variety of information retrieval tasks. The two most common prompts to elicit LLM relevance judgments are pointwise scoring (a.k.a. relevance…

Machine Learning · Computer Science 2025-05-27 Charles Godfrey , Ping Nie , Natalia Ostapuk , David Ken , Shang Gao , Souheil Inati

Reasoning over procedural sequences, where the order of steps directly impacts outcomes, is a critical capability for large language models (LLMs). In this work, we study the task of reconstructing globally ordered sequences from shuffled…

Computation and Language · Computer Science 2025-11-18 Adrita Anika , Md Messal Monem Miah

Optimization modeling underpins decision-making in logistics, manufacturing, energy, and finance, yet translating natural-language requirements into correct optimization formulations and solver-executable code remains labor-intensive.…

Machine Learning · Computer Science 2026-05-27 Zhong Li , Hongliang Lu , Tao Wei , Yuxuan Chen , Wenyu Liu , Yuan Lan , Fan Zhang , Zaiwen Wen

Large language models (LLMs) are increasingly deployed for understanding large codebases, but whether they understand operational semantics of long code context or rely on pattern matching shortcuts remains unclear. We distinguish between…

Computation and Language · Computer Science 2026-04-21 Adam Štorek , Mukur Gupta , Samira Hajizadeh , Prashast Srivastava , Suman Jana

Due to their architecture and vast pre-training data, large language models (LLMs) demonstrate strong text classification performance. However, LLM output - here, the category assigned to a text - depends heavily on the wording of the…

Computation and Language · Computer Science 2025-12-04 Kylie L. Anglin , Stephanie Milan , Brittney Hernandez , Claudia Ventura

Sorting is a tedious but simple task for human intelligence and can be solved fairly easily algorithmically. However, for Large Language Models (LLMs) this task is surprisingly hard, as some properties of sorting are among known weaknesses…

Machine Learning · Computer Science 2025-04-14 Steffen Herbold

Set theory is foundational to mathematics and, when sets are finite, to reasoning about the world. An intelligent system should perform set operations consistently, regardless of superficial variations in the operands. Initially designed…

Computation and Language · Computer Science 2024-11-13 Bardiya Akhbari , Manish Gawali , Nicholas A. Dronen

Large Language Models (LLMs) have achieved remarkable success in tasks requiring complex reasoning, such as code generation, mathematical problem solving, and algorithmic synthesis -- especially when aided by reasoning tokens and…

Computation and Language · Computer Science 2025-06-13 Jaechul Roh , Varun Gandhi , Shivani Anilkumar , Arin Garg

Large language models (LLMs) have demonstrated solid zero-shot reasoning capabilities, which is reflected in their performance on the current test tasks. This calls for a more challenging benchmark requiring highly advanced reasoning…

Computation and Language · Computer Science 2023-06-05 Maksym Del , Mark Fishel

The rapid advancement of large language models (LLMs) demands robust, unbiased, and scalable evaluation methods. However, human annotations are costly to scale, model-based evaluations are susceptible to stylistic biases, and…

Modern generative pre-trained language models excel at open-ended text generation, yet continue to underperform on structure-related tasks such as NER, relation extraction, and semantic role labeling, especially when compared to…

Computation and Language · Computer Science 2025-12-23 Minho Lee , Junghyun Min , Yerang Kim , Woochul Lee , Yeonsoo Lee

Making an informed choice of pre-trained language model (LM) is critical for performance, yet environmentally costly, and as such widely underexplored. The field of Computer Vision has begun to tackle encoder ranking, with promising forays…

Computation and Language · Computer Science 2022-06-13 Max Müller-Eberstein , Rob van der Goot , Barbara Plank
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