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Large language models (LLMs) are deployed on increasingly complex tasks that require multi-step decision-making. Understanding their algorithmic reasoning abilities is therefore crucial. However, we lack a diagnostic benchmark for…
This paper demonstrates that language models are strong structure-based protein designers. We present LM-Design, a generic approach to reprogramming sequence-based protein language models (pLMs), that have learned massive sequential…
Typical evaluations of Large Language Models (LLMs) report a single metric per dataset, often representing the model's best-case performance under carefully selected settings. Unfortunately, this approach overlooks model robustness and…
Recent work on word ordering has argued that syntactic structure is important, or even required, for effectively recovering the order of a sentence. We find that, in fact, an n-gram language model with a simple heuristic gives strong…
Large language models (LLMs) trained with canonical tokenization exhibit surprising robustness to non-canonical inputs such as character-level tokenization, yet the mechanisms underlying this robustness remain unclear. We study this…
Recent large language models (LLMs) demonstrate impressive capabilities in handling long contexts, some exhibiting near-perfect recall on synthetic retrieval tasks. However, these evaluations have mainly focused on English text and involved…
Prompt Recovery, reconstructing prompts from the outputs of large language models (LLMs), has grown in importance as LLMs become ubiquitous. Most users access LLMs through APIs without internal model weights, relying only on outputs and…
Recovering the structure of causal graphical models from observational data is an essential yet challenging task for causal discovery in scientific scenarios. Domain-specific causal discovery usually relies on expert validation or prior…
Large language models (LLMs) obtain state of the art zero shot relevance ranking performance on a variety of information retrieval tasks. The two most common prompts to elicit LLM relevance judgments are pointwise scoring (a.k.a. relevance…
Reasoning over procedural sequences, where the order of steps directly impacts outcomes, is a critical capability for large language models (LLMs). In this work, we study the task of reconstructing globally ordered sequences from shuffled…
Optimization modeling underpins decision-making in logistics, manufacturing, energy, and finance, yet translating natural-language requirements into correct optimization formulations and solver-executable code remains labor-intensive.…
Large language models (LLMs) are increasingly deployed for understanding large codebases, but whether they understand operational semantics of long code context or rely on pattern matching shortcuts remains unclear. We distinguish between…
Due to their architecture and vast pre-training data, large language models (LLMs) demonstrate strong text classification performance. However, LLM output - here, the category assigned to a text - depends heavily on the wording of the…
Sorting is a tedious but simple task for human intelligence and can be solved fairly easily algorithmically. However, for Large Language Models (LLMs) this task is surprisingly hard, as some properties of sorting are among known weaknesses…
Set theory is foundational to mathematics and, when sets are finite, to reasoning about the world. An intelligent system should perform set operations consistently, regardless of superficial variations in the operands. Initially designed…
Large Language Models (LLMs) have achieved remarkable success in tasks requiring complex reasoning, such as code generation, mathematical problem solving, and algorithmic synthesis -- especially when aided by reasoning tokens and…
Large language models (LLMs) have demonstrated solid zero-shot reasoning capabilities, which is reflected in their performance on the current test tasks. This calls for a more challenging benchmark requiring highly advanced reasoning…
The rapid advancement of large language models (LLMs) demands robust, unbiased, and scalable evaluation methods. However, human annotations are costly to scale, model-based evaluations are susceptible to stylistic biases, and…
Modern generative pre-trained language models excel at open-ended text generation, yet continue to underperform on structure-related tasks such as NER, relation extraction, and semantic role labeling, especially when compared to…
Making an informed choice of pre-trained language model (LM) is critical for performance, yet environmentally costly, and as such widely underexplored. The field of Computer Vision has begun to tackle encoder ranking, with promising forays…