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The microalga Chlamydomonas Reinhardtii (CR) is used here as a model system to study the effect of complex environments on the swimming of micro-organisms. Its motion can be modelled by a run and tumble mechanism so that it describes a…

Soft Condensed Matter · Physics 2019-03-27 Marvin Brun-Cosme-Bruny , Eric Bertin , Benoît Coasne , Philippe Peyla , Salima Rafaï

To survive in ever-changing environments, living organisms need to continuously combine the ongoing external inputs they receive, representing present conditions, with their dynamical internal state, which includes influences of past…

Neurons and Cognition · Quantitative Biology 2024-02-09 Maria Sol Vidal-Saez , Oscar Vilarroya , Jordi Garcia-Ojalvo

The potential of industrial applications for microalgae has motivated their recent fast development. Their growth dynamics depends on different factors that must be optimized. Since they get their energy from photosynthesis, light is a key…

Numerical Analysis · Mathematics 2021-08-24 Olivier Bernard , Liu-Di Lu

Inspired by biology's use of vesicles for targeted transport, many studies have propelled liposomes with active matter, creating synthetic systems that can be viewed as microscale biohybrid robots. Nevertheless, the underlying motility…

How the cells break symmetry and organize their edge activity to move directionally is a fun- damental question in cell biology. Physical models of cell motility commonly rely on gradients of regulatory factors and/or feedback from the…

This paper focuses on mixing strategies to enhance the growth of microalgae in a raceway pond. The flow is assumed to be laminar and the Han model describing the dynamics of the photosystems is used as a basis to determine growth rate as a…

Optimization and Control · Mathematics 2020-10-22 Olivier Bernard , Liudi Lu , Julien Salomon

Active particles (living or synthetic) often move through inhomogeneous environments, such as gradients in light, heat or nutrient concentration, that can lead to directed motion (or taxis). Recent research has explored inhomogeneity in the…

Soft Condensed Matter · Physics 2022-08-23 Jiahao Gong , Vaseem A. Shaik , Gwynn J. Elfring

Flocks of birds, schools of fish, mixtures of motors and cytoskeletal filaments, swimming bacteria and driven granular media are systems of interacting motile units that exhibit collective behaviour. These can all be described as active…

Cell Behavior · Quantitative Biology 2022-06-08 P. Varuni , Shakti N. Menon , Gautam I. Menon

Photosynthetic algae play a significant role in oceanic carbon capture. Their performance, however, is constantly challenged by fluctuations in environmental light conditions. Here, we show that the non-motile single-celled marine…

Biological Physics · Physics 2024-05-01 Nico Schramma , Gloria Casas Canales , Maziyar Jalaal

Suspensions of motile microorganisms can spontaneously form large-scale fluid motion, known as bioconvection, characterized by dense downwelling plumes separated by broad upwelling regions. In this study, we investigate bioconvection in…

Fluid Dynamics · Physics 2025-07-01 S. Gore , I. Gholami , S. O. Ahmed , T. Doskhozhina , S. V. R. Ambadipudi , A. J. Bae , A. Gholami

Collective motion provides a spectacular example of self-organization in Nature. Visual information plays a crucial role among various types of information in determining interactions. Recently, experiments have revealed that organisms such…

Adaptation and Self-Organizing Systems · Physics 2024-07-26 Susumu Ito , Nariya Uchida

We experimentally investigate the role of illumination on the collective dynamics of a large school (ca. 50 individuals) of Hemigrammus rhodostomus. The structure of the group, defined using two order parameters, is quantified while…

Adaptation and Self-Organizing Systems · Physics 2023-01-24 Baptiste Lafoux , Jeanne Moscatelli , Ramiro Godoy-Diana , Benjamin Thiria

Escherichia coli has long been used as a model organism due to the extensive experimental characterization of its pathways and molecular components. Take chemotaxis as an example, which allows bacteria to sense and swim in response to…

Cell Behavior · Quantitative Biology 2015-12-09 Gabriele Micali , Robert G. Endres

Motivated by recent experiments demonstrating that motile algae get trapped in draining foams, we study the trajectories of microorganisms confined in model foam channels (section of a Plateau border). We track single Chlamydomonas…

Biological Physics · Physics 2021-04-19 Albane Théry , Yuxuan Wang , Mariia Dvoriashyna , Christophe Eloy , Florence Elias , Eric Lauga

We develop and analyze a spatial temporal model of light driven ecotoxicological processes, motivated by an aquatic predator-prey system of algae and \textsl{Daphnia} subject to a contaminant. Population dynamics are driven by light, which…

Populations and Evolution · Quantitative Biology 2021-01-01 A. Ibragimov , A. Peace

Microscopic active droplets are of interest since they can be used to transport matter from one point to another. The challenge is to control the trajectory. In this work, we demonstrate an approach to control the direction of active…

Soft Condensed Matter · Physics 2024-06-17 Vanessa Jirón , Mojtaba Rajabi , Hao Wang , Oleg D. Lavrentovich

Microalgae, vital for ecological balance and economic sectors, present challenges in detection due to their diverse sizes and conditions. This paper summarizes the second "Vision Meets Algae" (VisAlgae 2023) Challenge, aiming to enhance…

Migratory and tissue resident cells exhibit highly branched morphologies to perform their function and to adapt to the microenvironment. Immune cells, for example, display transient branched shapes while exploring the surrounding tissues.…

Biological Physics · Physics 2024-04-02 Jiayi Liu , Javier Boix-Campos , Jonathan E. Ron , Johan M. Kux , Nir S. Gov , Pablo J. Sáez

Biofilms are spatially organized microorganism colonies embedded in a self-produced matrix, conferring to the microbial community resistance to environmental stresses. Motile bacteria have been observed swimming in the matrix of pathogenic…

Quantitative Methods · Quantitative Biology 2022-05-24 Guillaume Ravel , Michel Bergmann , Alain Trubuil , Julien Deschamps , Romain Briandet , Simon Labarthe

The self-organization of microbial ecosystems involves a large variety of mechanisms, ranging from biochemical signaling to population dynamics. Among these, the role of motility regulation has been little studied, despite the importance of…

Statistical Mechanics · Physics 2025-03-18 Alberto Dinelli , Ada Altieri , Julien Tailleur