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Generating keyphrases that summarize the main points of a document is a fundamental task in natural language processing. Although existing generative models are capable of predicting multiple keyphrases for an input document as well as…

Computation and Language · Computer Science 2019-06-11 Hou Pong Chan , Wang Chen , Lu Wang , Irwin King

The efficient exploration of chemical space remains a central challenge, as many generative models still produce unstable or non-synthesizable compounds. To address these limitations, we present EvoMol-RL, a significant extension of the…

Machine Learning · Computer Science 2025-10-02 Gaelle Milon-Harnois , Chaimaa Touhami , Nicolas Gutowski , Benoit Da Mota , Thomas Cauchy

We apply reinforcement learning (RL) to generate fine regular star triangulations of reflexive polytopes, that give rise to smooth Calabi-Yau (CY) hypersurfaces. We demonstrate that, by simple modifications to the data encoding and reward…

High Energy Physics - Theory · Physics 2024-06-17 Per Berglund , Giorgi Butbaia , Yang-Hui He , Elli Heyes , Edward Hirst , Vishnu Jejjala

The rapid progression of generative AI (GenAI) technologies has heightened concerns regarding the misuse of AI-generated imagery. To address this issue, robust detection methods have emerged as particularly compelling, especially in…

Graphics · Computer Science 2025-04-07 Hongfei Cai , Chi Liu , Sheng Shen , Youyang Qu , Peng Gui

Generative AI has the potential to revolutionize drug discovery. Yet, despite recent advances in deep learning, existing models cannot generate molecules that satisfy all desired physicochemical properties. Herein, we describe IDOLpro, a…

Chemical Physics · Physics 2025-04-29 Amit Kadan , Kevin Ryczko , Erika Lloyd , Adrian Roitberg , Takeshi Yamazaki

Reinforcement learning (RL) over text representations can be effective for finding high-value policies that can search over graphs. However, RL requires careful structuring of the search space and algorithm design to be effective in this…

Machine Learning · Computer Science 2023-10-05 Raj Ghugare , Santiago Miret , Adriana Hugessen , Mariano Phielipp , Glen Berseth

Sub-visible particle analysis using flow imaging microscopy combined with deep learning has proven effective in identifying particle types, enabling the distinction of harmless components such as silicone oil from protein particles.…

Computer Vision and Pattern Recognition · Computer Science 2025-08-11 Utku Ozbulak , Michaela Cohrs , Hristo L. Svilenov , Joris Vankerschaver , Wesley De Neve

Generating molecules with desired chemical properties presents a critical challenge in fields such as chemical synthesis and drug discovery. Recent advancements in artificial intelligence (AI) and deep learning have significantly…

Machine Learning · Computer Science 2025-09-25 Chen Li , Huidong Tang , Ye Zhu , Yoshihiro Yamanishi

Purpose: Magnetic resonance imaging (MRI) exams include multiple series with varying contrast and redundant information. For instance, T2-FLAIR contrast is based upon tissue T2 decay and the presence of water, also present in T2- and…

The integration of artificial intelligence (AI) in early-stage drug discovery offers unprecedented opportunities for exploring chemical space and accelerating hit-to-lead optimization. However, docking optimization in generative approaches…

Quantitative Methods · Quantitative Biology 2025-10-03 Ekaterina Podplutova , Anastasia Vepreva , Olga A. Konovalova , Vladimir Vinogradov , Dmitrii O. Shkil , Andrei Dmitrenko

Fluorescence microscopy has enabled a dramatic development in modern biology by visualizing biological organisms with micrometer scale resolution. However, due to the diffraction limit, sub-micron/nanometer features are difficult to…

Image and Video Processing · Electrical Eng. & Systems 2021-03-10 Varun Mannam , Yide Zhang , Xiaotong Yuan , Scott Howard

Rational design of covalent inhibitors requires simultaneously optimizing multiple properties, such as binding affinity, target selectivity, or electrophilic reactivity. This presents a multi-objective problem not easily addressed by…

Machine Learning · Computer Science 2026-04-23 Renee Gil

Many generative applications, such as synthesis-based 3D molecular design, involve constructing compositional objects with continuous features. Here, we introduce Compositional Generative Flows (CGFlow), a novel framework that extends flow…

Machine Learning · Computer Science 2025-07-16 Tony Shen , Seonghwan Seo , Ross Irwin , Kieran Didi , Simon Olsson , Woo Youn Kim , Martin Ester

Reinforcement learning (RL) is increasingly applied to real-world problems involving complex and structured decisions, such as routing, scheduling, and assortment planning. These settings challenge standard RL algorithms, which struggle to…

Machine Learning · Computer Science 2025-10-29 Heiko Hoppe , Léo Baty , Louis Bouvier , Axel Parmentier , Maximilian Schiffer

Protein generative models have shown remarkable promise in protein design, yet their success rates remain constrained by reliance on curated sequence-structure datasets and by misalignment between supervised objectives and real design…

Machine Learning · Computer Science 2026-03-03 Ziwen Wang , Jiajun Fan , Ruihan Guo , Thao Nguyen , Heng Ji , Ge Liu

Investigating conformational landscapes of proteins is a crucial way to understand their biological functions and properties. AlphaFlow stands out as a sequence-conditioned generative model that introduces flexibility into structure…

Machine Learning · Computer Science 2024-07-18 Shaoning Li , Mingyu Li , Yusong Wang , Xinheng He , Nanning Zheng , Jian Zhang , Pheng-Ann Heng

This study addresses the challenge of integrating complex, high-dimensional deep semantic features with simple, interpretable structural cues for lyrical content classification. We introduce a novel Synergistic Fusion Layer (SFL)…

Machine Learning · Computer Science 2025-11-18 M. A. Gameiro

Flow-based latent generative models such as Stable Diffusion 3 are able to generate images with remarkable quality, even enabling photorealistic text-to-image generation. Their impressive performance suggests that these models should also…

Computer Vision and Pattern Recognition · Computer Science 2025-10-13 Julius Erbach , Dominik Narnhofer , Andreas Dombos , Bernt Schiele , Jan Eric Lenssen , Konrad Schindler

Recent advances such as OpenAI-o1 and DeepSeek R1 have demonstrated the potential of Reinforcement Learning (RL) to enhance reasoning abilities in Large Language Models (LLMs). While open-source replication efforts have primarily focused on…

The automated generation of research workflows is essential for improving the reproducibility of research and accelerating the paradigm of "AI for Science". However, existing methods typically extract merely fragmented procedural components…

Computation and Language · Computer Science 2025-09-24 Heng Zhang , Chengzhi Zhang