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Reconstructing dynamical evolution from limited observations is a fundamental challenge in single-cell biology, where dynamic unbalanced optimal transport provides a principled framework for modeling coupled transport and mass variation.…

Machine Learning · Computer Science 2026-01-29 Xinyu Wang , Ruoyu Wang , Qiangwei Peng , Peijie Zhou , Tiejun Li

Score-based diffusion models currently constitute the state of the art in continuous generative modeling. These methods are typically formulated via overdamped or underdamped Ornstein--Uhlenbeck-type stochastic differential equations, in…

Machine Learning · Computer Science 2025-12-22 Herlock Rahimi

Generative modeling typically concerns transporting a single source distribution to a target distribution via simple probability flows. However, in fields like computer graphics and single-cell genomics, samples themselves can be viewed as…

Machine Learning · Computer Science 2025-05-20 Doron Haviv , Aram-Alexandre Pooladian , Dana Pe'er , Brandon Amos

This paper explores a novel connection between two areas: shape analysis of surfaces and unbalanced optimal transport. Specifically, we characterize the square root normal field (SRNF) shape distance as the pullback of the…

Differential Geometry · Mathematics 2022-02-22 Martin Bauer , Emmanuel Hartman , Eric Klassen

As a fundamental problem of natural language processing, it is important to measure the distance between different documents. Among the existing methods, the Word Mover's Distance (WMD) has shown remarkable success in document semantic…

Machine Learning · Computer Science 2019-07-12 Zihao Wang , Datong Zhou , Yong Zhang , Hao Wu , Chenglong Bao

Digital twins (DTs) rely on continuous synchronization between physical systems and their virtual counterparts through online parameter estimation under uncertainty. In many practical settings, however, this task is challenged by low…

Computational Engineering, Finance, and Science · Computer Science 2026-05-19 Yasar Yanik , Himadri Basu , Ricardo G. Sanfelice , Daniele Venturi

In our previous work [Chen el al., J. Comput. Phys., 373(2018)], the quadratic Wasserstein metric is successfully applied to the earthquake location problem. The actual earthquake hypocenter can be accurately recovered starting from initial…

Numerical Analysis · Mathematics 2018-12-04 D. T. Zhou , J. Chen , H. Wu , D. H. Yang , L. Y. Qiu

Wasserstein-Fisher-Rao (WFR) gradient flows have been recently proposed as a powerful sampling tool that combines the advantages of pure Wasserstein (W) and pure Fisher-Rao (FR) gradient flows. Existing algorithmic developments implicitly…

Machine Learning · Statistics 2026-03-02 Francesca Romana Crucinio , Sahani Pathiraja

The dynamic formulation of optimal transport, also known as the Benamou-Brenier formulation, has been extended to the unbalanced case by introducing a source term in the continuity equation. When this source term is penalized based on the…

Optimization and Control · Mathematics 2025-12-11 Mao Nishino , Martin Bauer , Tom Needham , Nicolas Charon

Learning the underlying dynamics of single cells from snapshot data has gained increasing attention in scientific and machine learning research. The destructive measurement technique and cell proliferation/death result in unpaired and…

Machine Learning · Computer Science 2025-11-11 Dongyi Wang , Yuanwei Jiang , Zhenyi Zhang , Xiang Gu , Peijie Zhou , Jian Sun

Accurate emulation of multi-scale physical systems governed by PDEs demands models that remain stable over long autoregressive rollouts while preserving fine-scale structures. Deterministic emulators produce overly-smoothed predictions,…

Unbalanced optimal transport (UOT) provides a principled framework for modeling single-cell transitions and birth-death dynamics, but its high computational cost limits scalability to large-scale datasets. Although single-cell data often…

Machine Learning · Computer Science 2026-05-19 Qiangwei Peng , Lezhi Chen , Peijie Zhou

Pansharpening, a pivotal task in remote sensing for fusing high-resolution panchromatic and multispectral imagery, has garnered significant research interest. Recent advancements employing diffusion models based on stochastic differential…

Computer Vision and Pattern Recognition · Computer Science 2025-03-20 Zihan Cao , Yu Zhong , Liang-Jian Deng

Using the dual formulation only, we show that the regularity of unbalanced optimal transport also called entropy-transport inherits from the regularity of standard optimal transport. We provide detailed examples of Riemannian manifolds and…

Optimization and Control · Mathematics 2024-07-02 Thomas Gallouët , Roberta Ghezzi , François-Xavier Vialard

Recent flow matching (FM) methods improve the few-shot adaptation of vision-language models, by modeling cross-modal alignment as a continuous multi-step flow. In this paper, we argue that existing FM methods are inherently constrained by…

Computer Vision and Pattern Recognition · Computer Science 2026-05-07 Hongxu Chen , Yanghao Wang , Bowei Zhu , Hongxiang Li , Zhen Wang , Ziqi Jiang , Lin Li , Rui Liu , Long Chen

We present a computationally efficient framework, called $\texttt{FlowDRO}$, for solving flow-based distributionally robust optimization (DRO) problems with Wasserstein uncertainty sets while aiming to find continuous worst-case…

Machine Learning · Computer Science 2024-02-27 Chen Xu , Jonghyeok Lee , Xiuyuan Cheng , Yao Xie

Flow matching has recently emerged as a flexible and efficient framework for generative modelling by learning deterministic transport dynamics between probability measures. In this work, we extend flow matching to the space of probability…

Machine Learning · Computer Science 2026-05-12 Moritz Piening , Richard Duong , Gabriele Steidl

Flow Matching (FM) generative models offer efficient simulation-free training and deterministic sampling, but their practical deployment is challenged by high-precision parameter requirements. We adapt optimal transport (OT)-based…

Machine Learning · Computer Science 2025-11-17 Dara Varam , Diaa A. Abuhani , Imran Zualkernan , Raghad AlDamani , Lujain Khalil

Likelihood-based deep generative models have been widely investigated for Image Anomaly Detection (IAD), particularly Normalizing Flows, yet their strict architectural invertibility needs often constrain scalability, particularly in…

Computer Vision and Pattern Recognition · Computer Science 2026-04-15 Liangwei Li , Lin Liu , Hanzhe Liang , Juanxiu Liu , Jing Zhang , Ruqian Hao , Xiaohui Du , Yong Liu , Pan Li

High-fidelity modeling of turbulent flows requires capturing complex spatiotemporal dynamics and multi-scale intermittency, posing a fundamental challenge for traditional knowledge-based systems. While deep generative models, such as…

Machine Learning · Computer Science 2026-04-08 Li Kunpeng , Wan Chenguang , Qu Zhisong , Lim Kyungtak , Virginie Grandgirard , Xavier Garbet , Yu Hua , Ong Yew Soon
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