Related papers: Efficient and Reliable Estimation of Named Entity …

Bioinformatics workflows are essential for complex biological data analyses and are often described in scientific articles with source code in public repositories. Extracting detailed workflow information from articles can improve…

This paper presents DWIE, the 'Deutsche Welle corpus for Information Extraction', a newly created multi-task dataset that combines four main Information Extraction (IE) annotation subtasks: (i) Named Entity Recognition (NER), (ii)…

Here we present the training and evaluation of NanoNER, a Named Entity Recognition (NER) model for Nanobiology. NER consists in the identification of specific entities in spans of unstructured texts and is often a primary task in Natural…

Medical image annotation typically requires expert knowledge and hence incurs time-consuming and expensive data annotation costs. To alleviate this burden, we propose a novel learning scenario, Exemplar Learning (EL), to explore automated…

Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…

Named Entity Recognition (NER) plays an important role in a wide range of natural language processing tasks, such as relation extraction, question answering, etc. However, previous studies on NER are limited to particular genres, using…

This work addresses challenges arising from extracting entities from textual data, including the high cost of data annotation, model accuracy, selecting appropriate evaluation criteria, and the overall quality of annotation. We present a…

Many previous models of named entity recognition (NER) suffer from the problem of Out-of-Entity (OOE), i.e., the tokens in the entity mentions of the test samples have not appeared in the training samples, which hinders the achievement of…

Current systems of fine-grained entity typing use distant supervision in conjunction with existing knowledge bases to assign categories (type labels) to entity mentions. However, the type labels so obtained from knowledge bases are often…

Named entity discovery (NED) is an important information retrieval problem that can be decomposed into two sub-problems. The first sub-problem, named entity recognition (NER), aims to tag pre-defined sets of words in a vocabulary (called…

Named entity recognition (NER) is a fundamental part of extracting information from documents in biomedical applications. A notable advantage of NER is its consistency in extracting biomedical entities in a document context. Although…

Named-entity recognition (NER) is fundamental to extracting structured information from the >80% of healthcare data that resides in unstructured clinical notes and biomedical literature. Despite recent advances with large language models,…

Named Entity Recognition (NER) is a critical component of Natural Language Processing with diverse applications in information extraction and conversational AI. However, NER in specific domains for low-resource languages faces challenges…

Medical entity extraction (EE) is a standard procedure used as a first stage in medical texts processing. Usually Medical EE is a two-step process: named entity recognition (NER) and named entity normalization (NEN). We propose a novel…

Extracting fine-grained experimental findings from literature can provide dramatic utility for scientific applications. Prior work has developed annotation schemas and datasets for limited aspects of this problem, failing to capture the…

In many scenarios, named entity recognition (NER) models severely suffer from unlabeled entity problem, where the entities of a sentence may not be fully annotated. Through empirical studies performed on synthetic datasets, we find two…

This work presents our participation in the EvalLLM 2025 challenge on biomedical Named Entity Recognition (NER) and health event extraction in French (few-shot setting). For NER, we propose three approaches combining large language models…

Available training data for named entity recognition (NER) often contains a significant percentage of incorrect labels for entity types and entity boundaries. Such label noise poses challenges for supervised learning and may significantly…

Existing scholarly information extraction (SIE) datasets focus on scientific papers and overlook implementation-level details in code repositories. README files describe datasets, source code, and other implementation-level artifacts,…

Named entity recognition (NER) identifies typed entity mentions in raw text. While the task is well-established, there is no universally used tagset: often, datasets are annotated for use in downstream applications and accordingly only…