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Related papers: A Polarization Hall Effect in Hydrated DNA

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Hydrogen bonding plays a crucial role in biology and technology, yet it remains poorly understood and quantified despite its fundamental importance. Traditional models, which describe hydrogen bonds as electrostatic interactions between…

It is discussed some problems of normal states of high temperature superconductors (HTS's) with d-wave pairing and next suppositions: 1) at pseudogap temperature it occurs the dimensional crossover from 3D incoherent normal state to quasi…

Superconductivity · Physics 2007-05-23 G. Sergeeva

The existence of water dimers in equilibrium water vapor at room temperature and their anomalous properties revealed by recent studies suggest the benchmark role of water dimer in both experiment and theory. However, there has been a…

Mesoscale and Nanoscale Physics · Physics 2022-12-08 Shuning Cai , Lauri Kurki , Chen Xu , Adam S. Foster , Peter Liljeroth

We develop a correlation-corrected transport theory in order to predict ionic and polymer transport properties of membrane nanopores in physical conditions where mean-field electrostatics breaks down. The experimentally observed low KCl…

Soft Condensed Matter · Physics 2014-11-06 Sahin Buyukdagli , Tapio Ala-Nissila

A statistical model of homopolymer DNA, coupling internal base pair states (unbroken or broken) and external thermal chain fluctuations, is exactly solved using transfer kernel techniques. The dependence on temperature and DNA length of the…

Soft Condensed Matter · Physics 2007-08-29 J. Palmeri , M. Manghi , N. Destainville

The imaginary time path integral formalism is applied to a nonlinear Hamiltonian for a short fragment of heterogeneous DNA with a stabilizing solvent interaction term. Torsional effects are modeled by a twist angle between neighboring base…

Biomolecules · Quantitative Biology 2011-09-19 Marco Zoli

The thermally induced denaturation of DNA in the presence of attractive solid surface is studied. The two strands of DNA are modeled via two coupled flexible chains without volume interactions. If the two strands are adsorbed on the…

Soft Condensed Matter · Physics 2015-05-13 A. E. Allahverdyan , Zh. S. Gevorkian , Chin-Kun Hu , Th. M. Nieuwenhuizen

We investigate the orientational order of transverse polarization vectors of long, stiff polymer molecules and their coupling to bond orientational and positional order in high density mesophases. Homogeneous ordering of transverse…

Soft Condensed Matter · Physics 2009-11-07 V. Lorman , R. Podgornik , B. Žekš

In this work we propose a model for DNA double helix within the tight-binding framework that incorporates the helicity of the molecules. We have studied localization properties of three DNAsequences,the periodic poly(dG)-poly(dC) and…

Mesoscale and Nanoscale Physics · Physics 2015-07-27 Sourav Kundu , S. N. Karmakar

DNA denaturation has long been a subject of intense study due to its relationship to DNA transcription and its fundamental importance as a nonlinear, structural transition. Many aspects of this phenomenon, however, remain poorly understood.…

Mesoscale and Nanoscale Physics · Physics 2011-06-16 Kirill A. Velizhanin , Chih-Chun Chien , Yonatan Dubi , Michael Zwolak

The phonon Hall effect conventionally describes the generation of a transverse heat current in an applied magnetic field. In this work, we extend the effect to hybrid light-matter excitations and demonstrate theoretically that phonon…

Materials Science · Physics 2025-09-22 Omer Yaniv , Dominik M. Juraschek

A theory of thermoelectric phenomena in superfluid $^4He$ is developed. It is found an estimation of the dipole moment of helium atom arising due to electron shell deformation caused by pushing forces from the side of its surrounding atoms.…

Other Condensed Matter · Physics 2015-05-20 V. P. Mineev

Electroporation is a physical method to induce the uptake of therapeutic drugs and DNA, by eukaryotic cells and tissues. The phenomena behind electro-mediated membrane permeabilization to plasmid DNA have been shown to be significantly more…

DNA self-assembly is a well-understood nanotechnology to obtain extremely ordered structures from the nanometer to up to the hundred of microns scale. By contrast, DNA hydrogels rely on the disordered assembly of DNA building blocks to…

When DNA molecules are heated they denature. This occurs locally so that loops of molten single DNA strands form, connected by intact double-stranded DNA pieces. The properties of this "melting" transition have been intensively…

Biological Physics · Physics 2015-06-29 E. Werner , M. Reiter-Schad , T. Ambjörnsson , B. Mehlig

We study theoretically the feasibility of using transverse electronic transport within a nanopore for rapid DNA sequencing. Specifically, we examine the effects of the environment and detection probes on the distinguishability of the DNA…

Soft Condensed Matter · Physics 2009-11-13 Johan Lagerqvist , Michael Zwolak , Massimiliano Di Ventra

Molecular dynamics computer simulations of collective excitations in a system of hard disks confined to a narrow channel of the specific width, that resembles 2D triangular lattice at disk close packing, are performed. We found that…

Soft Condensed Matter · Physics 2020-09-09 Adrian Huerta , Taras Bryk , Andrij Trokhymchuk

We measure the rheology of transient hydrogels comprised of a single type of DNA nanostar that makes both strong and weak bonds. These gels exhibit power-law frequency-dependence of their storage and loss moduli, with scaling exponents that…

Soft Condensed Matter · Physics 2023-08-29 Nathaniel Conrad , Omar A. Saleh , Deborah K. Fygenson

When the DNA double helix is subjected to external forces it can stretch elastically to elongations reaching 100% of its natural length. These distortions, imposed at the mesoscopic or macroscopic scales, have a dramatic effect on…

Materials Science · Physics 2009-11-13 Ryan Barnett , Paul Maragakis , Ari Turner , Maria Fyta , Efthimios Kaxiras

We study the hydrodynamic behavior of three dimensional (3D) incompressible collections of self-propelled entities in contact with a momentum sink in a state with non-zero average velocity, hereafter called 3D easy-plane incompressible…

Soft Condensed Matter · Physics 2018-10-31 Leiming Chen , Chiu Fan Lee , John Toner