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This article presents MuMFiM, an open source application for multiscale modeling of fibrous materials on massively parallel computers. MuMFiM uses two scales to represent fibrous materials such as biological network materials (extracellular…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-04 Jacob Merson , Catalin Picu , Mark S. Shephard

GPU-based fast Fourier transform (FFT) is extremely important for scientific computing and signal processing. However, we find the inefficiency of existing FFT libraries and the absence of fault tolerance against soft error. To address…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-12-10 Shixun Wu , Yujia Zhai , Jinyang Liu , Jiajun Huang , Zizhe Jian , Huangliang Dai , Sheng Di , Franck Cappello , Zizhong Chen

The Fast Fourier Transform (FFT) is a fundamental numerical technique with widespread application in a range of scientific problems. As scientific simulations attempt to exploit exascale systems, there has been a growing demand for…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-21 Sana Taghipour Anvari , Julian Samaroo , Matin Raayai Ardakani , David Kaeli

Accurate and efficient thermal dynamics models of permanent magnet synchronous motors are vital to efficient thermal management strategies. Physics-informed methods combine model-based and data-driven methods, offering greater flexibility…

Systems and Control · Electrical Eng. & Systems 2025-11-21 Xinyuan Liao , Shaowei Chen , Shuai Zhao

Java is the "go-to" programming language choice for developing scalable enterprise cloud applications. In such systems, even a few percent CPU time savings can offer a significant competitive advantage and cost saving. Although performance…

Performance · Computer Science 2021-04-09 Bolun Li , Pengfei Su , Milind Chabbi , Shuyin Jiao , Xu Liu

Performance in modern GPU-centric systems increasingly depends on resource management policies, including memory placement, scheduling, and observability. However, uniform policies typically yield suboptimal performance across diverse…

Operating Systems · Computer Science 2025-12-23 Yusheng Zheng , Tong Yu , Yiwei Yang , Minghui Jiang , Xiangyu Gao , Jianchang Su , Yanpeng Hu , Wenan Mao , Wei Zhang , Dan Williams , Andi Quinn

GPUs are popular devices for accelerating scientific calculations. However, as GPU code is usually written in low-level languages, it breaks the abstractions of high-level languages popular with scientific programmers. To overcome this, we…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-04-13 Tim Besard , Pieter Verstraete , Bjorn De Sutter

We provide a flexible, open-source framework for hardware acceleration, namely massively-parallel execution on general-purpose graphics processing units (GPUs), applied to the hierarchical Poincar\'e--Steklov (HPS) family of algorithms for…

Numerical Analysis · Mathematics 2025-11-17 Owen Melia , Daniel Fortunato , Jeremy Hoskins , Rebecca Willett

Hardware heterogeneity is here to stay for high-performance computing. Large-scale systems are currently equipped with multiple GPU accelerators per compute node and are expected to incorporate more specialized hardware in the future. This…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-10-05 Polykarpos Thomadakis , Nikos Chrisochoides

Gaussian Process Regression (GPR) is an important type of supervised machine learning model with inherent uncertainty measure in its predictions. We propose a new framework, nuGPR, to address the well-known challenge of high computation…

Machine Learning · Computer Science 2025-10-15 Ziqi Zhao , Vivek Sarin

Arbitrary-precision integer multiplication is the core kernel of many applications in simulation, cryptography, etc. Existing acceleration of arbitrary-precision integer multiplication includes CPUs, GPUs, FPGAs, and ASICs. Among these…

Hardware Architecture · Computer Science 2023-09-22 Zhuoping Yang , Jinming Zhuang , Jiaqi Yin , Cunxi Yu , Alex K. Jones , Peipei Zhou

Computing systems have shifted towards highly parallel and heterogeneous architectures to tackle the challenges imposed by limited power budgets. These architectures must be supported by novel power management paradigms addressing the…

Performance · Computer Science 2023-05-12 Sergio Mazzola , Thomas Benz , Björn Forsberg , Luca Benini

Adaptive finite elements combined with geometric multigrid solvers are one of the most efficient numerical methods for problems such as the instationary Navier-Stokes equations. Yet despite their efficiency, computations remain expensive…

Numerical Analysis · Mathematics 2025-12-23 Manuel Liebchen , Robert Jendersie , Utku Kaya , Christian Lessig , Thomas Richter

As exascale systems reach unprecedented concurrency, traditional performance analysis tools struggle with the overhead of massive-scale telemetry. We present an accelerated infrastructure for the hpcanalysis framework that leverages a…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-12 Dragana Grbic

We present the GPU version of DeePMD-kit, which, upon training a deep neural network model using ab initio data, can drive extremely large-scale molecular dynamics (MD) simulation with ab initio accuracy. Our tests show that the GPU version…

Computational Physics · Physics 2020-10-28 Denghui Lu , Han Wang , Mohan Chen , Jiduan Liu , Lin Lin , Roberto Car , Weinan E , Weile Jia , Linfeng Zhang

This paper presents a high-performance framework for three-dimensional gravity modeling and inversion implemented in Julia, addressing key challenges in geophysical modeling such as computational complexity, ill-posedness, and the…

Geophysics · Physics 2026-02-05 Nimatullah , Pankaj K Mishra , Jochen Kamm , Anand Singh

Fourier transforms are an often necessary component in many computational tasks, and can be computed efficiently through the fast Fourier transform (FFT) algorithm. However, many applications involve an underlying continuous signal, and a…

Mathematical Software · Computer Science 2022-09-27 Eric Bezzam , Sepand Kashani , Paul Hurley , Martin Vetterli , Matthieu Simeoni

We demonstrate a GPU-accelerated nested sampling framework for efficient high-dimensional Bayesian inference in cosmology. Using JAX-based neural emulators and likelihoods for cosmic microwave background and cosmic shear analyses, our…

Cosmology and Nongalactic Astrophysics · Physics 2025-10-08 Toby Lovick , David Yallup , Davide Piras , Alessio Spurio Mancini , Will Handley

High-Throughput materials discovery involves the rapid synthesis, measurement, and characterization of many different but structurally-related materials. A key problem in materials discovery, the phase map identification problem, involves…

Open-source simulation tools play a crucial role for neuromorphic application engineers and hardware architects to investigate performance bottlenecks and explore design optimizations before committing to silicon. Reconfigurable…

Emerging Technologies · Computer Science 2024-04-26 Sahil Hassan , Michael Inouye , Miguel C. Gonzalez , Ilkin Aliyev , Joshua Mack , Maisha Hafiz , Ali Akoglu