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The extracellular space has an ambiguous role in neuroscience. It is present in every physiologically relevant system and often used as a measurement site in experimental recordings, but it has received subordinate attention compared to the…

Neurons and Cognition · Quantitative Biology 2017-05-02 Jurgis Pods

Automated sample preparation and electron microscopy enables acquisition of very large image data sets. These technical advances are of special importance to the field of neuroanatomy, as 3D reconstructions of neuronal processes at the nm…

We develop a general analytical and numerical framework for estimating intra- and extra-neurite water fractions and diffusion coefficients, as well as neurite orientational dispersion, in each imaging voxel. By employing a set of rotational…

Biological Physics · Physics 2018-04-10 Dmitry S. Novikov , Jelle Veraart , Ileana O. Jelescu , Els Fieremans

We propose to analyze dynamically changing brain networks by decomposing them into three orthogonal components through the Hodge decomposition. We propose to quantify the magnitude and relative strength of each component. We performed…

Neurons and Cognition · Quantitative Biology 2025-07-23 D. Vijay Anand , Anass B El-Yaagoubi , Hernando Ombao , Moo K. Chung

In studying structural inter-connections in the human brain, it is common to first estimate fiber bundles connecting different regions of the brain relying on diffusion MRI. These fiber bundles act as highways for neural activity and…

Applications · Statistics 2016-12-06 Zhengwu Zhang , Maxime Descoteaux , David B. Dunson

The spatial covariance matrix has been considered to be significant for beamformers. Standing upon the intersection of traditional beamformers and deep neural networks, we propose a causal neural beamformer paradigm called Embedding and…

Sound · Computer Science 2021-09-03 Andong Li , Wenzhe Liu , Chengshi Zheng , Xiaodong Li

This paper presents a novel single-channel decomposition approach to facilitate the decomposition of electroencephalography (EEG) signals recorded with limited channels. Our model posits that an EEG signal comprises short, shift-invariant…

Signal Processing · Electrical Eng. & Systems 2024-11-15 Hiroshi Higashi

When we hear the word "house", we don't just process sound, we imagine walls, doors, memories. The brain builds meaning through layers, moving from raw acoustics to rich, multimodal associations. Inspired by this, we build on recent work…

Machine Learning · Computer Science 2025-11-11 Kateryna Shapovalenko , Quentin Auster

Classification and quantitative characterization of neuronal morphologies from histological neuronal reconstruction is challenging since it is still unclear how to delineate a neuronal cell class and which are the best features to define…

Neurons and Cognition · Quantitative Biology 2025-03-05 Xavier Vasques , Laurent Vanel , Guillaume Villette , Laura Cif

Deep learning has led to significant advances in artificial intelligence, in part, by adopting strategies motivated by neurophysiology. However, it is unclear whether deep learning could occur in the real brain. Here, we show that a deep…

Neurons and Cognition · Quantitative Biology 2017-04-11 Jordan Guergiuev , Timothy P. Lillicrap , Blake A. Richards

In electrophysiology, microelectrodes are the primary source for recording neural data of single neurons (single unit activity). These microelectrodes can be implanted individually, or in the form of microelectrodes arrays, consisting of…

The mammalian brain is a metabolically expensive device, and evolutionary pressures have presumably driven it to make productive use of its resources. For sensory areas, this concept has been expressed more formally as an optimality…

Neurons and Cognition · Quantitative Biology 2016-03-02 Deep Ganguli , Eero P. Simoncelli

Periodic and nonperiodic components of electrophysiological signals are modelled in terms of syncronized sequences of closed loops of firing neurons correlated in Markov chains. Single closed loops of firing neurons reproduce fundamental…

Neurons and Cognition · Quantitative Biology 2022-09-19 P. Mazzetti , A. Carbone

Mounting evidence in neuroscience suggests the possibility of neuronal representations that individual neurons serve as the substrates of different mental representations in a point-to-point way. Combined with associationism, it can…

Neurons and Cognition · Quantitative Biology 2021-09-06 Chiyin Zheng

Numerical investigation of the interaction of electromagnetic fields with eukaryotic cells requires specifically adapted computer models. Virtual microdosimetry, used to investigate exposure, requires volumetric cell models, which are…

Traveling waves of neural activity are widely observed in the brain, but their precise computational function remains unclear. One prominent hypothesis is that they enable the transfer and integration of spatial information across neural…

Computer Vision and Pattern Recognition · Computer Science 2025-06-12 Mozes Jacobs , Roberto C. Budzinski , Lyle Muller , Demba Ba , T. Anderson Keller

This study introduces a biologically-inspired model designed to examine the role of coincidence detection cells in speech segregation tasks. The model consists of three stages: a time-domain cochlear model that generates instantaneous rates…

Neurons and Cognition · Quantitative Biology 2024-05-13 Asaf Zorea , Miriam Furst

Nervous systems are characterized by neurons displaying a diversity of morphological shapes. Traditionally, different shapes have been qualitatively described based on visual inspection and quantitatively described based on morphometric…

Neurons and Cognition · Quantitative Biology 2016-03-29 Lida Kanari , Paweł Dłotko , Martina Scolamiero , Ran Levi , Julian Shillcock , Kathryn Hess , Henry Markram

Neuromodulations as observed in the extracellular electrical potential recordings obtained from Electroencephalograms (EEG) manifest as organized, transient patterns that differ statistically from their featureless noisy background.…

Signal Processing · Electrical Eng. & Systems 2019-05-28 Shailaja Akella , Jose C. Principe

Models of neural networks have proven their utility in the development of learning algorithms in computer science and in the theoretical study of brain dynamics in computational neuroscience. We propose in this paper a spatial neural…

Neural and Evolutionary Computing · Computer Science 2014-05-06 Lucas Antiqueira , Liang Zhao