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The genetic blueprint for the essential functions of life is encoded in DNA, which is translated into proteins -- the engines driving most of our metabolic processes. Recent advancements in genome sequencing have unveiled a vast diversity…

Neural and Evolutionary Computing · Computer Science 2024-06-12 James S. L. Browning , Daniel R. Tauritz , John Beckmann

As deep neural networks continue to revolutionize various application domains, there is increasing interest in making these powerful models more understandable and interpretable, and narrowing down the causes of good and bad predictions. We…

Machine Learning · Statistics 2016-11-21 Viktoriya Krakovna , Finale Doshi-Velez

Spiking Neural Networks (SNN) are energy-efficient computing architectures that exchange spikes for processing information, unlike classical Artificial Neural Networks (ANN). Due to this, SNNs are better suited for real-life deployments.…

Neural and Evolutionary Computing · Computer Science 2020-05-04 Ravi Kumar Kushawaha , Saurabh Kumar , Biplab Banerjee , Rajbabu Velmurugan

The rise of Modular Deep Learning showcases its potential in various Natural Language Processing applications. Parameter-efficient fine-tuning (PEFT) modularity has been shown to work for various use cases, from domain adaptation to…

Computation and Language · Computer Science 2024-03-28 Mateusz Klimaszewski , Piotr Andruszkiewicz , Alexandra Birch

The integration of multi-omic data is pivotal for understanding complex diseases, but its high dimensionality and noise present significant challenges. Graph Neural Networks (GNNs) offer a robust framework for analyzing large-scale…

Quantitative Methods · Quantitative Biology 2024-12-23 Heming Zhang , Di Huang , Yixin Chen , Fuhai Li

Energy-based models (EBMs) are powerful probabilistic models, but suffer from intractable sampling and density evaluation due to the partition function. As a result, inference in EBMs relies on approximate sampling algorithms, leading to a…

Machine Learning · Computer Science 2020-01-10 Dieterich Lawson , George Tucker , Bo Dai , Rajesh Ranganath

Recent research has found that knowledge distillation can be effective in reducing the size of a network and in increasing generalization. A pre-trained, large teacher network, for example, was shown to be able to bootstrap a student model…

Computer Vision and Pattern Recognition · Computer Science 2021-10-12 Hyun Seung Lee , Christian Wallraven

Graphs serve as generic tools to encode the underlying relational structure of data. Often this graph is not given, and so the task of inferring it from nodal observations becomes important. Traditional approaches formulate a convex inverse…

Machine Learning · Computer Science 2024-06-24 Max Wasserman , Gonzalo Mateos

Accurate prediction of drug molecule solubility is crucial for therapeutic effectiveness and safety. Traditional methods often miss complex molecular structures, leading to inaccuracies. We introduce the YZS-Model, a deep learning framework…

Machine Learning · Computer Science 2024-08-14 Chenxu Wang , Haowei Ming , Jian He , Yao Lu , Junhong Chen

Diagnosis prediction is a critical task in healthcare, where timely and accurate identification of medical conditions can significantly impact patient outcomes. Traditional machine learning and deep learning models have achieved notable…

Machine Learning · Computer Science 2025-01-09 Qiuhao Lu , Rui Li , Elham Sagheb , Andrew Wen , Jinlian Wang , Liwei Wang , Jungwei W. Fan , Hongfang Liu

The current capacity of computers makes it possible to perform simulations of small systems with portable, explicit-solvent potentials achieving high degree of accuracy. However, simplified models must be employed to exploit the behaviour…

Biomolecules · Quantitative Biology 2015-06-18 R. Capelli , C. Paissoni , P. Sormanni , G. Tiana

Both accuracy and efficiency are of significant importance to the task of semantic segmentation. Existing deep FCNs suffer from heavy computations due to a series of high-resolution feature maps for preserving the detailed knowledge in…

Computer Vision and Pattern Recognition · Computer Science 2019-03-13 Tong He , Chunhua Shen , Zhi Tian , Dong Gong , Changming Sun , Youliang Yan

Issues of safety, explainability, and efficiency are of increasing concern in learning systems deployed with hard and soft constraints. Symbolic Constrained Learning and Knowledge Distillation techniques have shown promising results in this…

Artificial Intelligence · Computer Science 2024-05-28 Miguel Angel Mendez-Lucero , Enrique Bojorquez Gallardo , Vaishak Belle

This study proposes a knowledge distillation algorithm based on large language models and feature alignment, aiming to effectively transfer the knowledge of large pre-trained models into lightweight student models, thereby reducing…

Computation and Language · Computer Science 2024-12-30 Shuo Wang , Chihang Wang , Jia Gao , Zhen Qi , Hongye Zheng , Xiaoxuan Liao

Implicit Graph Neural Networks (GNNs) have achieved significant success in addressing graph learning problems recently. However, poorly designed implicit GNN layers may have limited adaptability to learn graph metrics, experience…

Machine Learning · Computer Science 2024-02-16 Guoji Fu , Mohammed Haroon Dupty , Yanfei Dong , Lee Wee Sun

Graph neural networks (GNNs) have demonstrated superior performance in collaborative recommendation through their ability to conduct high-order representation smoothing, effectively capturing structural information within users' interaction…

Information Retrieval · Computer Science 2025-05-29 Guoxuan Chen , Lianghao Xia , Chao Huang

While dynamic graph neural networks have shown promise in various applications, explaining their predictions on continuous-time dynamic graphs (CTDGs) is difficult. This paper investigates a new research task: self-interpretable GNNs for…

Machine Learning · Computer Science 2024-05-30 Lanting Fang , Yulian Yang , Kai Wang , Shanshan Feng , Kaiyu Feng , Jie Gui , Shuliang Wang , Yew-Soon Ong

Recent advances have indicated the strengths of self-supervised pre-training for improving representation learning on downstream tasks. Existing works often utilize self-supervised pre-trained models by fine-tuning on downstream tasks.…

Computer Vision and Pattern Recognition · Computer Science 2022-11-28 Yuchen Ma , Yanbei Chen , Zeynep Akata

Deep convolutional neural networks achieve remarkable performance by exhaustively processing dense spatial feature maps, yet this brute-force strategy introduces significant computational redundancy and encourages reliance on spurious…

Computer Vision and Pattern Recognition · Computer Science 2026-04-15 Tom Devynck , Bilal Faye , Djamel Bouchaffra , Nadjib Lazaar , Hanane Azzag , Mustapha Lebbah

It has been observed that message-passing graph neural networks (GNN) sometimes struggle to maintain a healthy balance between the efficient/scalable modeling of long-range dependencies across nodes while avoiding unintended consequences…

Machine Learning · Computer Science 2025-05-21 Yongyi Yang , Tang Liu , Yangkun Wang , Zengfeng Huang , David Wipf
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