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The absence of intrinsic adjacency relations and orientation systems in hypergraphs creates fundamental challenges for constructing sheaf Laplacians of arbitrary degrees. We resolve these limitations through symmetric simplicial sets…

Machine Learning · Computer Science 2025-08-01 Seongjin Choi , Gahee Kim , Yong-Geun Oh

Graph Convolutional Networks (GCNs) have been widely used due to their outstanding performance in processing graph-structured data. However, the undirected graphs limit their application scope. In this paper, we extend spectral-based graph…

Machine Learning · Computer Science 2020-04-30 Zekun Tong , Yuxuan Liang , Changsheng Sun , David S. Rosenblum , Andrew Lim

Real-world dynamic graphs are often directed, with source and destination nodes exhibiting asymmetrical behavioral patterns and temporal dynamics. However, existing dynamic graph architectures largely rely on shared parameters for…

Machine Learning · Computer Science 2026-02-27 Tyler Bonnet , Marek Rei

In large networks, using the length of shortest paths as the distance measure has shortcomings. A well-studied shortcoming is that extending it to disconnected graphs and directed graphs is controversial. The second shortcoming is that a…

Data Structures and Algorithms · Computer Science 2018-04-03 Mostafa Haghir Chehreghani , Albert Bifet , Talel Abdessalem

Most graph-network-based meta-learning approaches model instance-level relation of examples. We extend this idea further to explicitly model the distribution-level relation of one example to all other examples in a 1-vs-N manner. We propose…

Computer Vision and Pattern Recognition · Computer Science 2020-04-02 Ling Yang , Liangliang Li , Zilun Zhang , Xinyu Zhou , Erjin Zhou , Yu Liu

Learning graph-structured data with graph neural networks (GNNs) has been recently emerging as an important field because of its wide applicability in bioinformatics, chemoinformatics, social network analysis and data mining. Recent GNN…

Machine Learning · Computer Science 2021-12-16 Cheolhyeong Kim , Haeseong Moon , Hyung Ju Hwang

Learning in hyperbolic spaces has attracted increasing attention due to its superior ability to model hierarchical structures of data. Most existing hyperbolic learning methods use fixed distance measures for all data, assuming a uniform…

Computer Vision and Pattern Recognition · Computer Science 2025-06-24 Pengxiang Li , Yuwei Wu , Zhi Gao , Xiaomeng Fan , Wei Wu , Zhipeng Lu , Yunde Jia , Mehrtash Harandi

While numerous methods have been proposed for computing distances between probability distributions in Euclidean space, relatively little attention has been given to computing such distances for distributions on graphs. However, there has…

Machine Learning · Computer Science 2023-06-06 Samuel Leone , Aarthi Venkat , Guillaume Huguet , Alexander Tong , Guy Wolf , Smita Krishnaswamy

Deep Learning's recent successes have mostly relied on Convolutional Networks, which exploit fundamental statistical properties of images, sounds and video data: the local stationarity and multi-scale compositional structure, that allows…

Machine Learning · Computer Science 2015-06-18 Mikael Henaff , Joan Bruna , Yann LeCun

Accurate prediction of protein-ligand binding structures, a task known as molecular docking is crucial for drug design but remains challenging. While deep learning has shown promise, existing methods often depend on holo-protein structures…

Biomolecules · Quantitative Biology 2024-02-22 Yufei Huang , Odin Zhang , Lirong Wu , Cheng Tan , Haitao Lin , Zhangyang Gao , Siyuan Li , Stan. Z. Li

The information diffusion performance of GCN and its variant models is limited by the adjacency matrix, which can lower their performance. Therefore, we introduce a new framework for graph convolutional networks called Hybrid…

Machine Learning · Computer Science 2023-04-03 Zhi Yang , Kang Li , Haitao Gan , Zhongwei Huang , Ming Shi

This paper presents DDTracking, a novel deep generative framework for diffusion MRI tractography that formulates streamline propagation as a conditional denoising diffusion process. In DDTracking, we introduce a dual-pathway encoding…

Computer Vision and Pattern Recognition · Computer Science 2026-02-04 Yijie Li , Wei Zhang , Xi Zhu , Ye Wu , Yogesh Rathi , Lauren J. O'Donnell , Fan Zhang

Graph Transformers (GTs) facilitate the comprehension of graph-structured data by calculating the self-attention of node pairs without considering node position information. To address this limitation, we introduce an innovative and…

Machine Learning · Computer Science 2023-12-12 Kushal Bose , Swagatam Das

We consider a collection of $n$ points in $\mathbb{R}^d$ measured at $m$ times, which are encoded in an $n \times d \times m$ data tensor. Our objective is to define a single embedding of the $n$ points into Euclidean space which summarizes…

Classical Analysis and ODEs · Mathematics 2019-11-27 Nicholas F. Marshall , Matthew J. Hirn

Directed graphs have asymmetric connections, yet the current graph clustering methodologies cannot identify the potentially global structure of these asymmetries. We give a spectral algorithm called di-sim that builds on a dual measure of…

Machine Learning · Statistics 2015-01-09 Karl Rohe , Tai Qin , Bin Yu

Graph neural networks (GNNs) are widely used in the applications based on graph structured data, such as node classification and link prediction. However, GNNs are often used as a black-box tool and rarely get in-depth investigated…

Social and Information Networks · Computer Science 2023-12-27 Haoteng Yin , Yanbang Wang , Pan Li

Graph spanners are sparse subgraphs which approximately preserve all pairwise shortest-path distances in an input graph. The notion of approximation can be additive, multiplicative, or both, and many variants of this problem have been…

Data Structures and Algorithms · Computer Science 2019-11-19 Manuel Fernandez , David P. Woodruff , Taisuke Yasuda

We introduce a novel diffusion-based spectral algorithm to tackle regression analysis on high-dimensional data, particularly data embedded within lower-dimensional manifolds. Traditional spectral algorithms often fall short in such…

Machine Learning · Statistics 2024-10-21 Weichun Xia , Jiaxin Jiang , Lei Shi

Analysis of signals defined on complex topologies modeled by graphs is a topic of increasing interest. Signal decomposition plays a crucial role in the representation and processing of such information, in particular, to process graph…

Signal Processing · Electrical Eng. & Systems 2025-02-18 Harry H. Behjat , Carl-Fredrik Westin , Rik Ossenkoppele , Dimitri Van De Ville

Diffusion models, as a novel generative paradigm, have achieved remarkable success in various image generation tasks such as image inpainting, image-to-text translation, and video generation. Graph generation is a crucial computational task…

Machine Learning · Computer Science 2023-08-29 Chengyi Liu , Wenqi Fan , Yunqing Liu , Jiatong Li , Hang Li , Hui Liu , Jiliang Tang , Qing Li