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Large language models (LLMs) can generate code rapidly but remain unreliable for scientific algorithms whose correctness depends on structural assumptions rarely explicit in the source literature. We introduce a multi-stage LLM-assisted…

Computational Physics · Physics 2026-04-13 Yi Zhou

Manual digitisation of structured handwritten documents is slow and costly. We benchmark 17 leading frontier multi-modal large language models and open-source models against a very challenging real-world medical form that mixes dates;…

Computer Vision and Pattern Recognition · Computer Science 2026-04-21 Nicholas Pather , Joshua Fouché , Sitwala Mundia , Karl-Günter Technau , Thokozile Malaba , Alex Welte , Ushma Mehta , Bruce A. Bassett

LLM agents routinely serve as first (and sometimes only) readers of academic papers, skimming for sub-claims, extracting reproducibility steps, and generalizing scope. Standard prose papers produce recurring failures in this role:…

Digital Libraries · Computer Science 2026-05-18 Arquimedes Canedo

Writing a survey paper on one research topic usually needs to cover the salient content from numerous related papers, which can be modeled as a multi-document summarization (MDS) task. Existing MDS datasets usually focus on producing the…

Computation and Language · Computer Science 2023-02-10 Shuaiqi Liu , Jiannong Cao , Ruosong Yang , Zhiyuan Wen

Biomedical evidence synthesis relies on accurate extraction of methodological, laboratory, and outcome variables from full-text research articles, yet these variables are embedded in complex scientific PDFs that make manual abstraction…

Computation and Language · Computer Science 2026-01-22 Pouria Mortezaagha , Joseph Shaw , Bowen Sun , Arya Rahgozar

Scientific data are widely dispersed across research articles and are often reported inconsistently across text, tables, and figures, making manual data extraction and aggregation slow and error-prone. We present a prompt-driven,…

Artificial Intelligence · Computer Science 2026-04-10 Koushik Rameshbabu , Jing Luo , Ali Shargh , Khalid A. El-Awady , Jaafar A. El-Awady

The problem of document structure reconstruction refers to converting digital or scanned documents into corresponding semantic structures. Most existing works mainly focus on splitting the boundary of each element in a single document page,…

Computation and Language · Computer Science 2023-03-27 Jiefeng Ma , Jun Du , Pengfei Hu , Zhenrong Zhang , Jianshu Zhang , Huihui Zhu , Cong Liu

Unstructured text from legal, medical, and administrative sources offers a rich but underutilized resource for research in public health and the social sciences. However, large-scale analysis is hampered by two key challenges: the presence…

Computation and Language · Computer Science 2025-07-16 Anders Ledberg , Anna Thalén

Unstructured documents like PDFs contain valuable structured information, but downstream systems require this data in reliable, standardized formats. LLMs are increasingly deployed to automate this extraction, making accuracy and…

Machine Learning · Computer Science 2026-02-17 Nick Ferguson , Josh Pennington , Narek Beghian , Aravind Mohan , Douwe Kiela , Sheshansh Agrawal , Thien Hang Nguyen

Large Language Models are increasingly being deployed to extract structured data from unstructured and semi-structured sources: parsing invoices, medical records, and converting PDF documents to database entries. Yet existing benchmarks for…

Computation and Language · Computer Science 2026-04-29 Abhinav Kumar Singh , Harsha Vardhan Khurdula , Yoeven D Khemlani , Vineet Agarwal

This paper presents BPMN Assistant, a tool that leverages Large Language Models for natural language-based creation and editing of BPMN diagrams. While direct XML generation is common, it is verbose, slow, and prone to syntax errors during…

Artificial Intelligence · Computer Science 2026-01-23 Josip Tomo Licardo , Nikola Tankovic , Darko Etinger

The evolution of AI systems toward agentic operation and context-aware retrieval necessitates transforming unstructured text into structured formats like tables, knowledge graphs, and charts. While such conversions enable critical…

Computation and Language · Computer Science 2025-08-19 Zheye Deng , Chunkit Chan , Tianshi Zheng , Wei Fan , Weiqi Wang , Yangqiu Song

Process simulation is a critical cornerstone of chemical engineering design. Current automated chemical design methodologies focus mainly on various representations of process flow diagrams. However, transforming these diagrams into…

Artificial Intelligence · Computer Science 2026-01-13 Xufei Tian , Wenli Du , Shaoyi Yang , Han Hu , Hui Xin , Shifeng Qu , Ke Ye

Electronic Health Records (EHRs) are integral for storing comprehensive patient medical records, combining structured data (e.g., medications) with detailed clinical notes (e.g., physician notes). These elements are essential for…

Computation and Language · Computer Science 2024-12-31 Yeonsu Kwon , Jiho Kim , Gyubok Lee , Seongsu Bae , Daeun Kyung , Wonchul Cha , Tom Pollard , Alistair Johnson , Edward Choi

Software documentation supports a broad set of software maintenance tasks; however, creating and maintaining high-quality, multi-level software documentation can be incredibly time-consuming and therefore many code bases suffer from a lack…

Software Engineering · Computer Science 2024-08-13 Katherine R. Dearstyne , Alberto D. Rodriguez , Jane Cleland-Huang

We present an end-to-end pipeline that converts healthcare policy documents into executable, data-aware Business Process Model and Notation (BPMN) models using large language models (LLMs) for simulation-based policy evaluation. We address…

Artificial Intelligence · Computer Science 2026-04-10 Praveen Kumar Menaka Sekar , Ion Matei , Maksym Zhenirovskyy , Hon Yung Wong , Sayuri Kohmura , Shinji Hotta , Akihiro Inomata

Scientific research indicates that for every hour spent in direct patient care, physicians spend nearly two additional hours on administrative tasks, particularly on electronic health records (EHRs) and desk work. This excessive…

Computation and Language · Computer Science 2025-09-25 Hui Yi Leong , Yi Fan Gao , Ji Shuai , Yang Zhang , Uktu Pamuksuz

RAG-based QA has emerged as a powerful method for processing long industrial documents. However, conventional text chunking approaches often neglect complex and long industrial document structures, causing information loss and reduced…

Artificial Intelligence · Computer Science 2026-04-15 Joongmin Shin , Chanjun Park , Jeongbae Park , Jaehyung Seo , Heuiseok Lim

The user of Engineering Manuals (EM) finds it difficult to read EM s because they are long, have a dense format which includes written documents, step by step procedures, and standard parameter lists for engineering equipment. Off the shelf…

Computation and Language · Computer Science 2025-12-25 Divij Dudeja , Mayukha Pal

The automated generation of research workflows is essential for improving the reproducibility of research and accelerating the paradigm of "AI for Science". However, existing methods typically extract merely fragmented procedural components…

Computation and Language · Computer Science 2025-09-24 Heng Zhang , Chengzhi Zhang
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