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Estimation of intracellular gene networks has been a critical component of single-cell transcriptomic data analysis, which can provide crucial insights into the complex interplay between genes, facilitating the discovery of the biological…

Applications · Statistics 2026-01-12 Jingyuan Yang , Tao Li , Tianyi Wang , Shuangge Ma , Mengyun Wu

An immersed concordance between two links is a concordance with possible self-intersections. Given an immersed concordance we construct a smooth four-dimensional cobordism between surgeries on links. By applying $d$-invariant inequalities…

Geometric Topology · Mathematics 2018-07-03 Maciej Borodzik , Eugene Gorsky

We consider the problem of embedding the nodes of a hypergraph into Euclidean space under the assumption that the interactions arose through closeness to unknown hyperedge centres. In this way, we tackle the inverse problem associated with…

Social and Information Networks · Computer Science 2025-09-11 Francesco Zigliotto , Desmond J. Higham

Biomedical association studies are increasingly done using clinical concepts, and in particular diagnostic codes from clinical data repositories as phenotypes. Clinical concepts can be represented in a meaningful, vector space using word…

Quantitative Methods · Quantitative Biology 2018-11-06 Brett K. Beaulieu-Jones , Isaac S. Kohane , Andrew L. Beam

Real epidemic spreading networks often composed of several kinds of networks interconnected with each other, and the interrelated networks have the different topologies and epidemic dynamics. Moreover, most human diseases are derived from…

Physics and Society · Physics 2017-06-21 Zhongpu Xu , Xinchu Fu

Cell complexes (CCs) are a higher-order network model deeply rooted in algebraic topology that has gained interest in signal processing and network science recently. However, while the processing of signals supported on CCs can be described…

Signal Processing · Electrical Eng. & Systems 2025-06-12 Josef Hoppe , Vincent P. Grande , Michael T. Schaub

Network alignment, the process of finding correspondences between nodes in different graphs, has many scientific and industrial applications. Existing unsupervised network alignment methods find suboptimal alignments that break up node…

Social and Information Networks · Computer Science 2020-08-19 Xiyuan Chen , Mark Heimann , Fatemeh Vahedian , Danai Koutra

International Classification of Diseases (ICD) are the de facto codes used globally for clinical coding. These codes enable healthcare providers to claim reimbursement and facilitate efficient storage and retrieval of diagnostic…

Computation and Language · Computer Science 2022-02-22 Pavithra Rajendran , Alexandros Zenonos , Josh Spear , Rebecca Pope

Learning graph representations via low-dimensional embeddings that preserve relevant network properties is an important class of problems in machine learning. We here present a novel method to embed directed acyclic graphs. Following prior…

Machine Learning · Computer Science 2018-06-08 Octavian-Eugen Ganea , Gary Bécigneul , Thomas Hofmann

Heteroclinic cycles and networks are structures in dynamical systems composed of invariant sets and connecting heteroclinic orbits, and can be robust in systems with invariant subspaces. The usual method for analysing the stability of…

Dynamical Systems · Mathematics 2026-04-02 David C. Groothuizen Dijkema , Vivien Kirk , Claire M. Postlethwaite

Latent Euclidean embedding models a given network by representing each node in a Euclidean space, where the probability of two nodes sharing an edge is a function of the distances between the nodes. This implies that for two nodes to share…

Social and Information Networks · Computer Science 2019-09-19 Clifford Anderson-Bergman , Phan Nguyen , Jose Cadena Pico

Real networks often form interacting parts of larger and more complex systems. Examples can be found in different domains, ranging from the Internet to structural and functional brain networks. Here, we show that these multiplex systems are…

Physics and Society · Physics 2017-09-11 Kaj-Kolja Kleineberg , Marian Boguna , M. Angeles Serrano , Fragkiskos Papadopoulos

The aim of the present paper is to efficiently describe the membrane potential dynamics of neural populations formed by species having a high density difference in specific brain areas. We propose a hybrid model whose main ingredients are a…

Neurons and Cognition · Quantitative Biology 2015-10-06 Anna Cattani , Sergio Solinas , Claudio Canuto

We introduce the concept of a semigroup coupled cell network and show that the collection of semigroup network vector fields forms a Lie algebra. This implies that near a dynamical equilibrium the local normal form of a semigroup network is…

Dynamical Systems · Mathematics 2012-09-17 Bob Rink , Jan Sanders

Spectral embedding finds vector representations of the nodes of a network, based on the eigenvectors of a properly constructed matrix, and has found applications throughout science and technology. Many networks are multipartite, meaning…

Methodology · Statistics 2025-10-27 Alexander Modell , Ian Gallagher , Joshua Cape , Patrick Rubin-Delanchy

In the paper we consider the linear underdetermined system of a special type. Systems of this type appear in non-homogeneous network flow programming problems in the form of systems of constraints and can be characterized as systems with a…

Optimization and Control · Mathematics 2008-07-04 Ludmila Pilipchuk , Eugene Vecharynski

Recently, there has been an interest in embedding networks in hyperbolic space, since hyperbolic space has been shown to work well in capturing graph/network structure as it can naturally reflect some properties of complex networks.…

Social and Information Networks · Computer Science 2020-11-04 Lili Wang , Ying Lu , Chenghan Huang , Soroush Vosoughi

Heterogeneous ultra-dense network (HUDN) can significantly increase the spectral efficiency of cellular networks and cater for the explosive growth of data traffic in the fifth-generation (5G) communications. Due to the dense deployment of…

Information Theory · Computer Science 2017-09-22 Hongliang Zhang , Lingyang Song , Yonghui Li , Geoffrey Ye Li

Decoupling uplink (UL) and downlink (DL) is a new architectural paradigm where DL and UL are not constrained to be associated to the same base station (BS). Building upon this paradigm, the goal of the present paper is to provide lower,…

Information Theory · Computer Science 2016-10-11 Alexis I. Aravanis , Olga Munoz , Antonio Pascual-Iserte , Josep Vidal

This paper presents a framework based on matrices of monoids for the study of coupled cell networks. We formally prove within the proposed framework, that the set of results about invariant synchrony patterns for unweighted networks also…

Multiagent Systems · Computer Science 2022-01-13 Pedro M. Sequeira , António P. Aguiar , João Hespanha
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