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We study the problem of semi-supervised learning on graphs, for which graph neural networks (GNNs) have been extensively explored. However, most existing GNNs inherently suffer from the limitations of over-smoothing, non-robustness, and…

Machine Learning · Computer Science 2021-09-22 Wenzheng Feng , Jie Zhang , Yuxiao Dong , Yu Han , Huanbo Luan , Qian Xu , Qiang Yang , Evgeny Kharlamov , Jie Tang

Graph neural networks (GNNs) have been demonstrated to be powerful in modeling graph-structured data. However, training GNNs usually requires abundant task-specific labeled data, which is often arduously expensive to obtain. One effective…

Machine Learning · Computer Science 2020-06-30 Ziniu Hu , Yuxiao Dong , Kuansan Wang , Kai-Wei Chang , Yizhou Sun

Graph Neural Networks (GNNs) are proficient in graph representation learning and achieve promising performance on versatile tasks such as node classification and link prediction. Usually, a comprehensive hyperparameter tuning is essential…

Machine Learning · Computer Science 2024-10-10 Lequan Lin , Dai Shi , Andi Han , Zhiyong Wang , Junbin Gao

Protein modeling is an increasingly popular area of machine learning research. Semi-supervised learning has emerged as an important paradigm in protein modeling due to the high cost of acquiring supervised protein labels, but the current…

Machine Learning · Computer Science 2019-06-20 Roshan Rao , Nicholas Bhattacharya , Neil Thomas , Yan Duan , Xi Chen , John Canny , Pieter Abbeel , Yun S. Song

In this paper, we propose different alternatives for convolutional neural networks (CNNs) segmentation, addressing inference processes on computing architectures composed by multiple Edge TPUs. Specifically, we compare the inference…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-04 Jorge Villarrubia , Luis Costero , Francisco D. Igual , Katzalin Olcoz

Despite an ever-increasing interest in topological deep learning models that target higher-order datasets, there is no consensus on how to evaluate such models. This is exacerbated by the fact that topological objects permit operations,…

Machine Learning · Computer Science 2026-05-08 Johannes S. Schmidt , Martin Carrasco , Ernst Röell , Guy Wolf , Nello Blaser , Bastian Rieck

One main challenge in imbalanced graph classification is to learn expressive representations of the graphs in under-represented (minority) classes. Existing generic imbalanced learning methods, such as oversampling and imbalanced learning…

Machine Learning · Computer Science 2024-05-20 Rongrong Ma , Guansong Pang , Ling Chen

We propose ZnG, a new GPU-SSD integrated architecture, which can maximize the memory capacity in a GPU and address performance penalties imposed by an SSD. Specifically, ZnG replaces all GPU internal DRAMs with an ultra-low-latency SSD to…

Hardware Architecture · Computer Science 2020-06-17 Jie Zhang , Myoungsoo Jung

The current graph neural network (GNN) systems have established a clear trend of not showing training accuracy results, and directly or indirectly relying on smaller datasets for evaluations majorly. Our in-depth analysis shows that it…

Machine Learning · Computer Science 2024-02-07 Yidong Gong , Arnab Tarafder , Saima Afrin , Pradeep Kumar

Graph Neural Networks (GNNs) have shown great success in many applications such as recommendation systems, molecular property prediction, traffic prediction, etc. Recently, CPU-FPGA heterogeneous platforms have been used to accelerate many…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-23 Yi-Chien Lin , Bingyi Zhang , Viktor Prasanna

Pruning is a legitimate method for reducing the size of a neural network to fit in low SWaP hardware, but the networks must be trained and pruned offline. We propose an algorithm, Artificial Neurogenesis (ANG), that grows rather than prunes…

Neural and Evolutionary Computing · Computer Science 2020-06-12 John Mixter , Ali Akoglu

Artificial Neural Networks (ANNs) require significant amounts of data and computational resources to achieve high effectiveness in performing the tasks for which they are trained. To reduce resource demands, various techniques, such as…

Neural and Evolutionary Computing · Computer Science 2024-12-04 A. Stolarek , W. Jaworek

We present BatchGNN, a distributed CPU system that showcases techniques that can be used to efficiently train GNNs on terabyte-sized graphs. It reduces communication overhead with macrobatching in which multiple minibatches' subgraph…

Machine Learning · Computer Science 2023-06-27 Loc Hoang , Rita Brugarolas Brufau , Ke Ding , Bo Wu

Deep Learning (DL) models have achieved superior performance. Meanwhile, computing hardware like NVIDIA GPUs also demonstrated strong computing scaling trends with 2x throughput and memory bandwidth for each generation. With such strong…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-05-26 Fuxun Yu , Di Wang , Longfei Shangguan , Minjia Zhang , Chenchen Liu , Xiang Chen

Improving the training and inference performance of graph neural networks (GNNs) is faced with a challenge uncommon in general neural networks: creating mini-batches requires a lot of computation and data movement due to the exponential…

Temporal Graph Neural Networks (TGNNs) have emerged as powerful tools for modeling dynamic interactions across various domains. The design space of TGNNs is notably complex, given the unique challenges in runtime efficiency and scalability…

Machine Learning · Computer Science 2024-12-31 Yuxin Yang , Hongkuan Zhou , Rajgopal Kannan , Viktor Prasanna

Accurately simulating physics is crucial across scientific domains, with applications spanning from robotics to materials science. While traditional mesh-based simulations are precise, they are often computationally expensive and require…

Machine Learning · Computer Science 2025-10-23 Philipp Dahlinger , Tai Hoang , Denis Blessing , Niklas Freymuth , Gerhard Neumann

Time series segmentation (TSS) is one of the time series (TS) analysis techniques, that has received considerably less attention compared to other TS related tasks. In recent years, deep learning architectures have been introduced for TSS,…

Machine Learning · Computer Science 2026-02-20 Ivana Kesić , Carolina Fortuna , Mihael Mohorčič , Blaž Bertalanič

Graph Neural Networks (GNNs) have demonstrated impressive performance across diverse graph-based tasks by leveraging message passing to capture complex node relationships. However, on large-scale real-world graphs, GNNs face two major…

Machine Learning · Computer Science 2026-03-10 Xiang Li , Jianpeng Qi , Haobing Liu , Yuan Cao , Guoqing Chao , Zhongying Zhao , Junyu Dong , Xinwang Liu , Yanwei Yu

Graph Neural Networks (GNN) are indispensable in learning from graph-structured data, yet their rising computational costs, especially on massively connected graphs, pose significant challenges in terms of execution performance. To tackle…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-11-05 Aishwarya Sarkar , Sayan Ghosh , Nathan R. Tallent , Ali Jannesari