English
Related papers

Related papers: MDAgent2: Large Language Model for Code Generation…

200 papers

Autonomous machine learning research has gained significant attention recently. We present MLR-COPILOT, an autonomous Machine Learning Research framework powered by large language model agents. The system is designed to enhance ML research…

Artificial Intelligence · Computer Science 2025-11-18 Ruochen Li , Teerth Patel , Qingyun Wang , Xinya Du

The promise of AI-driven scientific discovery hinges on whether AI agents can autonomously design and execute the computational workflows that underpin modern science. Molecular dynamics (MD) simulation presents a natural test bed to…

Artificial Intelligence · Computer Science 2026-05-12 Vinay Kumar , Satyendra Rajput , Mausam , N. M. Anoop Krishnan

Mathematical modeling is a cornerstone of scientific discovery and engineering practice, enabling the translation of real-world problems into formal systems across domains such as physics, biology, and economics. Unlike mathematical…

Artificial Intelligence · Computer Science 2025-05-21 Fan Liu , Zherui Yang , Cancheng Liu , Tianrui Song , Xiaofeng Gao , Hao Liu

Large Language Models (LLMs) have shown impressive capabilities in code generation for popular programming languages. However, their performance on Low-Resource Programming Languages (LRPLs) and Domain-Specific Languages (DSLs) remains a…

Software Engineering · Computer Science 2025-09-29 Sathvik Joel , Jie JW Wu , Fatemeh H. Fard

Large language models (LLMs) have revolutionized code generation, automating programming with remarkable efficiency. However, these advancements challenge programming skills, ethics, and assessment integrity, making the detection of…

Computation and Language · Computer Science 2025-07-18 Daniil Orel , Dilshod Azizov , Preslav Nakov

Large Language Models (LLMs) have enabled multi-agent systems to perform autonomous code generation for complex tasks. Despite the recent growth in research and industrial applications in this area, there is little work on synthesizing…

Software Engineering · Computer Science 2026-04-21 Zeeshan Rasheeda , Muhammad Waseema , Kai-Kristian Kemella , Mika Saari , Pekka Abrahamsson

Materials discovery and development are critical for addressing global challenges. Yet, the exponential growth in materials science literature comprising vast amounts of textual data has created significant bottlenecks in knowledge…

Large Language Model (LLM) has gained popularity and achieved remarkable results in open-domain tasks, but its performance in real industrial domain-specific scenarios is average due to its lack of specific domain knowledge. This issue has…

Computation and Language · Computer Science 2023-10-17 Fangkai Yang , Pu Zhao , Zezhong Wang , Lu Wang , Jue Zhang , Mohit Garg , Qingwei Lin , Saravan Rajmohan , Dongmei Zhang

Large language models show strong potential for automated code generation, but lack guarantees for correctness, quality, safety, and domain-specific constraints. For instance in robotics, where code generation is increasingly being used for…

Machine Learning · Computer Science 2026-05-21 Erfan Aghadavoodi Jolfaei , Daniel Maninger , Abhinav Anand , Mert Tiftikci , Mira Mezini

Chemical reasoning usually involves complex, multi-step processes that demand precise calculations, where even minor errors can lead to cascading failures. Furthermore, large language models (LLMs) encounter difficulties handling…

Computation and Language · Computer Science 2025-01-14 Xiangru Tang , Tianyu Hu , Muyang Ye , Yanjun Shao , Xunjian Yin , Siru Ouyang , Wangchunshu Zhou , Pan Lu , Zhuosheng Zhang , Yilun Zhao , Arman Cohan , Mark Gerstein

Large Language Models (LLMs) have shown impressive performance across various domains, but their ability to perform molecular reasoning remains underexplored. Existing methods mostly rely on general-purpose prompting, which lacks…

Existing MLLMs encounter significant challenges in modeling the temporal context within long videos. Currently, mainstream Agent-based methods use external tools to assist a single MLLM in answering long video questions. Despite such…

Computer Vision and Pattern Recognition · Computer Science 2025-12-23 Boyu Chen , Zhengrong Yue , Siran Chen , Zikang Wang , Yang Liu , Peng Li , Yali Wang

With the rapid advancement of computational techniques, Molecular Dynamics (MD) simulations have emerged as powerful tools in biomedical research, enabling in-depth investigations of biological systems at the atomic level. Among the diverse…

Biomolecules · Quantitative Biology 2024-09-05 Reza Bozorgpour

Developing machine learning interatomic potentials (MLIPs) for complex materials systems remains challenging because it requires expertise in atomistic simulations, machine learning, and workflow design, as well as iterative active learning…

Machine Learning · Computer Science 2026-05-15 Wenwen Li , Yuki Orimo , Nontawat Charoenphakdee

Scientific workflows in computational chemistry and materials science typically involve multiple interdependent steps, such as model preparation, system construction, simulation execution, and data analysis, that researchers have refined…

We present a modular framework powered by large language models (LLMs) that automates and streamlines key tasks across the early-stage computational drug discovery pipeline. By combining LLM reasoning with domain-specific tools, the…

Automated code generation using large language models (LLMs) has gained attention due to its efficiency and adaptability. However, real-world coding tasks or benchmarks like HumanEval and StudentEval often lack dedicated training datasets,…

Software Engineering · Computer Science 2025-01-15 Shuai Wang , Liang Ding , Yibing Zhan , Yong Luo , Zheng He , Dapeng Tao

Recent developments show that Large Language Models (LLMs) produce state-of-the-art performance on natural language (NL) to code generation for resource-rich general-purpose languages like C++, Java, and Python. However, their practical…

As Large Language Models (LLMs) are increasingly deployed in highly specialized vertical domains, the evaluation of their domain-specific performance becomes critical. However, existing evaluations for vertical domains typically rely on the…

Artificial Intelligence · Computer Science 2025-09-26 Wanying Wang , Zeyu Ma , Xuhong Wang , Yangchun Zhang , Pengfei Liu , Mingang Chen

The capabilities of Large Language Models (LLMs) in code generation have been extensively studied, particularly for implementing target functionalities from natural-language descriptions. Alternatively, input-output (I/O) examples provide…

Software Engineering · Computer Science 2025-05-13 Yingjie Fu , Bozhou Li , Linyi Li , Wentao Zhang , Tao Xie