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We study models of biological evolution and investigate a key factor to yield self-organized criticality (SOC). The Bak-Sneppen (BS) model is the most basic model that shows an SOC state, which is developed based on minimal and plausible…

Populations and Evolution · Quantitative Biology 2018-09-11 Yohsuke Murase , Per Arne Rikvold

We study a random neighbor version of the Bak-Sneppen model, where "nearest neighbors" are chosen according to a probability distribution decaying as a power-law of the distance from the active site, P(x) \sim |x-x_{ac }|^{-\omega}. All the…

Statistical Mechanics · Physics 2009-10-31 R. Cafiero , P. De Los Rios , A. Valleriani , J. L. Vega

We study the Bak-Sneppen model in the probabilistic framework of the Run Time Statistics (RTS). This model has attracted a large interest for its simplicity being a prototype for the whole class of models showing Self-Organized Criticality.…

Statistical Mechanics · Physics 2009-11-07 M. Felici , G. Caldarelli , A. Gabrielli , L. Pietronero

A new quantity, average fitness, is introduced in Bak-Sneppen evolution model. Through this new quantity, a new hierarchy of avalanches is observed in the evolution of Bak-Sneppen model. An exact gap equation, governing the…

Statistical Mechanics · Physics 2007-05-23 W. Li , X. Cai

Power spectral density scaling with frequency $f$ as $1/f^\beta$ and $\beta \approx 1$ is widely found in natural and socio-economic systems. Consequently, it has been suggested that such self-similar spectra reflect the universal dynamics…

Data Analysis, Statistics and Probability · Physics 2023-07-04 M. A. Korzeniowska , A. Theodorsen , M. Rypdal , O. E. Garcia

Time-dependent properties of the speckled intensity patterns created by scattering coherent radiation from materials undergoing spinodal decomposition are investigated by numerical integration of the Cahn-Hilliard-Cook equation. For binary…

Statistical Mechanics · Physics 2009-10-31 Gregory Brown , Per Arne Rikvold , Mark Sutton , Martin Grant

We introduce a new quantity, average fitness, into the Bak-Sneppen evolution model. Through the new quantity, a different hierarchy of avalanches is observed. The gap equation, in terms of the average fitness, is presented to describe the…

Statistical Mechanics · Physics 2009-10-31 W. Li , X. Cai

We study a size-structured population model in which individual cells grow at a rate determined by a fluctuating internal variable (e.g., gene expression levels). Many previous models of phenotypically heterogeneous populations can be…

Statistical Mechanics · Physics 2026-04-06 Ethan Levien , Yaïr Hein , Farshid Jafarpour

The eigenvalue probability density function (PDF) for the Gaussian unitary ensemble has a well known analogy with the Boltzmann factor for a classical log-gas with pair potential $- \log | x - y|$, confined by a one-body harmonic potential.…

Mathematical Physics · Physics 2020-11-25 Peter J. Forrester

In this work we study the effects of introducing long range interactions in the Bak-Sneppen (BS) model of biological evolution. We analyze a recebtly propopsed version of the BS model where the interactions decay as r^{-alpha}; in this way…

Disordered Systems and Neural Networks · Physics 2009-10-31 Pablo M. Gleiser , Francisco A. Tamarit , Sergio A. Cannas

Empirical determination of the scaling properties and exponents of time series presents a formidable challenge in testing, and developing, a theoretical understanding of turbulence and other out-of-equilibrium phenomena. We discuss the…

Fluid Dynamics · Physics 2020-01-29 S. C. Chapman , B. Hnat , G. Rowlands , N. W. Watkins

We consider discrete models of kinetic rough interfaces that exhibit space-time scale-invariance in height-height correlation. A generic scaling theory implies that the dynamical structure factor of the height profile can uniquely…

Statistical Mechanics · Physics 2023-10-06 Rahul Chhimpa , Avinash Chand Yadav

In a recent Letter [Phys. Rev. Lett. 79, 889 (1997) and cond-mat/9702054] we have demonstrated that the avalanches in the Bak-Sneppen model display aging behavior similar to glassy systems. Numerical results for temporal correlations show a…

Statistical Mechanics · Physics 2009-10-30 Stefan Boettcher

In the present work we extend the Bak-Sneppen model for biological evolution by introducing local interactions between species. This ``environmental'' perturbation can modify the intrinsic fitness of each element of the ecology, leading to…

Other Condensed Matter · Physics 2010-10-14 M. Bartolozzi , D. B. Leinweber , A. W. Thomas

Contrary to the recently published results by Daerden and Vanderzande [Phys. Rev. E 53, 4723 (1996)], we show that the time correlation function in the random-neighbor version of the Bak-Sneppen model can be well approximated by an…

Statistical Mechanics · Physics 2009-11-07 J. Davidsen , N. Luethje

We experimentally study density fluctuations and energy spectra of bulk \textit{E. coli} suspensions of different concentrations. Our results verify the predicted scaling law of giant number fluctuations in three-dimensional (3D) wet active…

Soft Condensed Matter · Physics 2021-10-28 Zhengyang Liu , Wei Zeng , Xiaolei Ma , Xiang Cheng

If deleterious mutations near a fitness maximum in a spatially distributed population are sufficiently frequent or detrimental, the population can undergo a fitness collapse, similarly to the Muller's ratchet effect in well-mixed…

Statistical Mechanics · Physics 2015-06-02 Maxim O. Lavrentovich

The Bak--Sneppen model is a simple stochastic model of evolution that exhibits self-organized criticality and for which few analytical results have been established. In the original Bak-Sneppen model and many subsequent variants,…

Adaptation and Self-Organizing Systems · Physics 2011-10-20 Michael Grinfeld , Philip A. Knight , Andrew R. Wade

We develop a model for the evolution of economic entities within a geographical type of framework. On a square symmetry lattice made of three (economic) regions, firms, described by a scalar fitness, are allowed to move, adapt, merge or…

Statistical Mechanics · Physics 2009-11-10 Marcel Ausloos , Paulette Clippe , Andrzej Pekalski

We extend a generic class of systems which have previously been shown to spontaneously develop scaling (power law) distributions of their elementary degrees of freedom. While the previous systems were linear and exploded exponentially for…

adap-org · Physics 2009-10-28 S. Solomon , M. Levy