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Accurate drug-target interaction (DTI) prediction is essential for computational drug discovery, yet existing models often rely on single-modality predefined molecular descriptors or sequence-based embeddings with limited…

The capacity to transfer knowledge across scientific domains relies on shared organizational principles. However, existing transfer-learning methodologies often fail to bridge radically heterogeneous systems, particularly under severe data…

Machine Learning · Computer Science 2026-02-12 Daniele Caligiore

Trained on massive cross-species DNA corpora, DNA large language models (LLMs) learn the fundamental "grammar" and evolutionary patterns of genomic sequences. This makes them powerful priors for DNA sequence modeling, particularly over long…

Genomics · Quantitative Biology 2025-11-19 Rui Zhu , Xiaopu Zhou , Haixu Tang , Stephen W. Scherer , Lucila Ohno-Machado

Deep learning models have demonstrated exceptional performance across a wide range of computer vision tasks. However, their performance often degrades significantly when faced with distribution shifts, such as domain or dataset changes.…

Computer Vision and Pattern Recognition · Computer Science 2025-07-09 Samuel Barbeau , Pedram Fekri , David Osowiechi , Ali Bahri , Moslem Yazdanpanah , Masih Aminbeidokhti , Christian Desrosiers

The automation of the medical evidence acquisition and diagnosis process has recently attracted increasing attention in order to reduce the workload of doctors and democratize access to medical care. However, most works proposed in the…

Computation and Language · Computer Science 2022-10-14 Arsene Fansi Tchango , Rishab Goel , Julien Martel , Zhi Wen , Gaetan Marceau Caron , Joumana Ghosn

Recently, Transformer architecture has been introduced into image restoration to replace convolution neural network (CNN) with surprising results. Considering the high computational complexity of Transformer with global attention, some…

Computer Vision and Pattern Recognition · Computer Science 2023-03-24 Zheng Chen , Yulun Zhang , Jinjin Gu , Yongbing Zhang , Linghe Kong , Xin Yuan

Accurate prediction of drug-target interactions (DTI) is pivotal for drug discovery, yet existing methods often fail to address challenges like cross-domain generalization, cold-start prediction, and interpretability. In this work, we…

Multimedia · Computer Science 2025-10-23 Xiangyu Li , Haojie Yang , Kaimiao Hu , Runzhi Wu , Liangliang Liu , Ran Su

Central pattern generators (CPGs) appear to have evolved multiple times throughout the animal kingdom, indicating that their design imparts a significant evolutionary advantage. Insight into how this design is achieved is hindered by the…

Biological Physics · Physics 2018-09-05 Eve Armstrong

Adapter-Tuning (AT) method involves freezing a pre-trained model and introducing trainable adapter modules to acquire downstream knowledge, thereby calibrating the model for better adaptation to downstream tasks. This paper proposes a…

Computer Vision and Pattern Recognition · Computer Science 2024-03-26 Jiacheng Ruan , Jingsheng Gao , Mingye Xie , Daize Dong , Suncheng Xiang , Ting Liu , Yuzhuo Fu

Deep learning-based speech enhancement methods have significantly improved speech quality and intelligibility. Convolutional neural networks (CNNs) have been proven to be essential components of many high-performance models. In this paper,…

Audio and Speech Processing · Electrical Eng. & Systems 2025-11-11 Dahan Wang , Xiaobin Rong , Shiruo Sun , Yuxiang Hu , Changbao Zhu , Jing Lu

Recently, document-level neural machine translation (NMT) has become a hot topic in the community of machine translation. Despite its success, most of existing studies ignored the discourse structure information of the input document to be…

Computation and Language · Computer Science 2020-06-23 Junxuan Chen , Xiang Li , Jiarui Zhang , Chulun Zhou , Jianwei Cui , Bin Wang , Jinsong Su

The Transformer architecture has been successful across many domains, including natural language processing, computer vision and speech recognition. In keyword spotting, self-attention has primarily been used on top of convolutional or…

Audio and Speech Processing · Electrical Eng. & Systems 2022-04-11 Axel Berg , Mark O'Connor , Miguel Tairum Cruz

Cell-level dense prediction is central to computational pathology, but remains challenging due to fine-grained histological structures, strong domain shifts, and costly dense annotations. Existing ViT-based pathology foundation models rely…

Computer Vision and Pattern Recognition · Computer Science 2026-05-12 Weiming Chen , Xitong Ling , Zhenyang Cai , Xidong Wang , Jiawen Li , Tian Guan , Benyou Wang , Yonghong He

Accurate and privacy-preserving diagnosis of ophthalmic diseases remains a critical challenge in medical imaging, particularly given the limitations of existing deep learning models in handling data imbalance, data privacy concerns, spatial…

Computer Vision and Pattern Recognition · Computer Science 2026-05-18 Md. Naimur Asif Borno , Md Sakib Hossain Shovon , MD Hanif Sikder , Iffat Firozy Rimi , Tahani Jaser Alahmadi , Mohammad Ali Moni

Unsupervised Domain Adaptation (UDA) seeks to transfer knowledge from a labeled source domain to an unlabeled target domain but often suffers from severe domain and scale gaps that degrade performance. Existing cross-attention-based…

Computer Vision and Pattern Recognition · Computer Science 2026-03-19 Zelin Zang , Yehui Yang , Fei Wang , Liangyu Li , Baigui Sun

Computer vision (CV) is one of the most crucial fields in artificial intelligence. In recent years, a variety of deep learning models based on convolutional neural networks (CNNs) and Transformers have been designed to tackle diverse…

Computer Vision and Pattern Recognition · Computer Science 2024-12-02 Wei Wang , Qing Li

Detecting and segmenting object instances is a common task in biomedical applications. Examples range from detecting lesions on functional magnetic resonance images, to the detection of tumours in histopathological images and extracting…

Computer Vision and Pattern Recognition · Computer Science 2021-04-12 Tim Prangemeier , Christoph Reich , Heinz Koeppl

For translational impact, both accurate drug response prediction and biological plausibility of predictive features are needed. We present drGT, a heterogeneous graph deep learning model over drugs, genes, and cell lines that couples…

Machine Learning · Computer Science 2026-03-18 Yoshitaka Inoue , Hunmin Lee , Tianfan Fu , Rui Kuang , Augustin Luna

Over the past decade, Deep Convolutional Neural Networks have been widely adopted for medical image segmentation and shown to achieve adequate performance. However, due to the inherent inductive biases present in the convolutional…

Computer Vision and Pattern Recognition · Computer Science 2021-07-08 Jeya Maria Jose Valanarasu , Poojan Oza , Ilker Hacihaliloglu , Vishal M. Patel

Continual Test-Time Adaptation (CTTA) seeks to adapt source pre-trained models to continually changing, unseen target domains. While existing CTTA methods assume structured domain changes with uniform durations, real-world environments…

Machine Learning · Computer Science 2025-06-09 Yunbei Zhang , Akshay Mehra , Shuaicheng Niu , Jihun Hamm